Cryptomeria japonica (Japanese cedar): 131068614
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Entry
131068614 CDS
T10556
Name
(RefSeq) E3 ubiquitin-protein ligase COP1 isoform X1
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf04120
Ubiquitin mediated proteolysis
cjf04712
Circadian rhythm - plant
Brite
Enzymes [BR:
cjf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
131068614
Ubiquitin system [BR:
cjf04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
131068614
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
131068614
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
131068614
NCBI-ProteinID:
XP_057859827
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Position
3:21022425..21090355
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AA seq
694 aa
AA seq
DB search
MEGSAGVRVPNSVKAEAMMLQEAPSSDVNNNNTGSGEWLSQGSNPGLPGVKKLDLDKDFF
CPICMQTIKDAFLTACGHSFCYTCIMTHLSNKNNCPCCGQYLTNNQLFPNFLLNKLLKKT
SACQLASTTSPAEHLRQSLQQGAEVSVKELDCLLTLLAEKKRKMEQEEAETNMEILLDFL
QRLKQHKQEELNEVQADLQYVKEDISTVEKRRLELSKARERYSLKLRMLLDDPIATSVGH
AAADNVNNRSASFMHGGQGGLMSGKFQQKRSEIKVQSSSQDIPKRTFFCGSDSQVLPIPS
GVTVARKRRVLAQFDDLQECYLQKRRHGTRPLRKSFDGGFRKERDGNNISREGYHAGLEE
FQSVLTTFTRYSRLRVIAELRHGDLFHNANIVSSIEFDRDDELFATAGVSRRIKVFEFAT
VVNEPADVHCPVVEMATRSKLSCLSWNKYIKSHIASSDYEGSVTVWDVNTQQAVMEYEEH
EKRAWSVDFSRTEPTMLVSGSDDGKVKVWCTRQETSVLNIDMKANICCVKYNPGSSNYVA
VGSADHNIHYYDLRNISDPLYVFSGHRKAVSYVKFISTNELASASTDSTLRLWDVKENCH
SQVRTFKGHANEKNFVGLTVNSEYIACGSETNEVFVYHKAISKAAAWHKFGSPDLDDSDD
DTSYFISAVTWKSESPTMLAANSQGTIKVLVLAP
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atggaaggttctgccggagttcgcgtgcctaattccgtcaaggcggaggcaatgatgttg
caggaggcgccatcaagtgacgtgaacaataataataccggtagtggagagtggctttcg
cagggatcgaacccgggtctgcccggtgtaaaaaagttggatttggataaggattttttt
tgccctatttgcatgcagacaattaaggatgcgtttctgacggcgtgcgggcatagtttt
tgttatacatgtattatgactcatctgagtaataagaacaattgcccctgctgtggacag
tatttaactaacaatcagctctttcccaactttttgcttaataagcttttgaagaagaca
tctgcttgtcaattagcaagtaccacatcaccggcagagcatcttcgacagtctttacaa
cagggagcagaagtctcagtaaaagagttggactgcctcttgactcttcttgcagagaag
aagcggaagatggaacaagaggaggctgaaacaaatatggagatacttcttgactttttg
caacgtttgaagcaacataaacaggaggagttgaatgaggtacaagcagatttgcagtat
gttaaggaggatatatctacagtggagaagcgaagattggaactgtccaaagccagagaa
cgatactccttgaaattacgtatgcttttagatgacccaatagccacttcagtaggtcat
gctgcagctgataatgtcaataatcgttctgcatctttcatgcatggtgggcaaggtggt
cttatgtcaggaaaatttcaacagaaaaggtctgaaatcaaggtgcaatctagttctcag
gacataccaaagagaacttttttttgtggttctgattcccaggttttgcccattccatca
ggagtgacagttgcaaggaagagacgagtgcttgcacagtttgatgatttacaagaatgc
tacttgcaaaaaagacggcatggtactcgccccttgagaaaatcatttgatggtggtttt
cgaaaagaaagagatgggaataatattagtagagaaggctatcatgcaggccttgaggaa
ttccagtctgttctcacaacatttactcgatacagtcgtttgagggtcattgcagaactt
cgacatggggatctattccacaatgcaaatattgtatcaagcatagagttcgatcgagat
gatgaattatttgccactgctggtgtttctaggcgtatcaaagtgtttgagtttgctacg
gtagtaaatgagcctgcagatgtgcactgtcctgttgttgagatggctactcggtcaaag
ttgagttgcttaagttggaacaagtatatcaagagtcatattgcgagcagtgattatgaa
ggcagtgttactgtttgggatgtaaatacacaacaggccgttatggagtatgaagagcat
gaaaaacgggcatggagtgtagatttttcacgcacagagcctacaatgcttgtctcaggc
agtgatgatggcaaggttaaggtatggtgcacaaggcaagaaacaagtgttctcaacata
gacatgaaagcaaatatttgttgtgtaaagtataatccaggctcaagcaattatgttgca
gttggttcagcagatcataacattcattattatgacttgagaaatatcagcgatccatta
tatgtatttagtggtcacaggaaagcagtttcatatgtcaaattcatatcaacaaatgaa
ctagcttctgcatcaacagacagtacattgcgattgtgggatgttaaggaaaattgccat
tctcaggtacggacattcaagggacatgctaatgagaagaattttgttgggcttacagtc
aacagtgaatacatagcttgtggcagtgaaacgaatgaggtgtttgtctaccacaaggct
atttcaaaggctgctgcttggcataaatttggcagtccagatctggatgacagtgatgat
gatacatcatattttataagtgctgttacttggaagagtgagagccctacaatgttggct
gcaaatagccaagggacaatcaaagtccttgtacttgcaccatga
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