Cryptomeria japonica (Japanese cedar): 131068637
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Entry
131068637 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131068637
03420 Nucleotide excision repair
131068637
03430 Mismatch repair
131068637
03440 Homologous recombination
131068637
03460 Fanconi anemia pathway
131068637
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131068637
03032 DNA replication proteins [BR:
cjf03032
]
131068637
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131068637
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131068637
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131068637
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131068637
MMR (mismatch excision repair)
131068637
DSBR (double strand breaks repair)
HR (homologous recombination)
131068637
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
REPA_OB_2
tRNA_anti-codon
DUF8448
DUF223
Motif
Other DBs
NCBI-GeneID:
131068637
NCBI-ProteinID:
XP_057859851
LinkDB
All DBs
Position
6
Genome browser
AA seq
442 aa
AA seq
DB search
MEVQMGWEALKDFFSELEKLLRVFEAPKVKGPKFDPEDYWYNGKILVEMAAVQLAPKLIP
LAPALIVVRMEFFLDARGVIIIFNLAIKFTNSSFFGKPRYLFKQQEQQMLNRDTSPTSKR
SLKFGIHMPPVQRETSNNISPIKALNPFQNKWSIKGRVTNKRKMHHYSSPKSSGKVFSFD
MIDVEGTEIRITCFGDIVEMHYHRVEAGAYYFLSKGTVREAKTKWNKLNSHLEITLDHNS
ILKHCDVTVDGEVNASRFTPINDITYCSNNTLVDVIGVVVYVGKPSIICRKDGTTVKKRA
IKINDMSSFSIDVNLWGAAWEGLGEDLKNMHATQTVVVLAVSNARVGYFNGKVINTIAAT
TLNINPSSPEADSLVSRGNIPVDLLTLSCVAGQLNSPYSRMTIASVLERMNVLSEIVETT
IRVVVRFIKNLFFLLSCLPFAI
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atggaggtgcaaatgggttgggaggccttgaaggattttttcagtgaactggagaagttg
ttgagagtgtttgaggctccaaaggtgaaggggccgaaatttgacccagaagactattgg
tataatggcaagattttggtggagatggcggcagtacaactggcaccgaagttaattcct
ttggctccagcattgattgttgttcggatggaattttttttggatgcaagaggggttatc
ataatattcaaccttgctatcaaatttacaaattcatctttttttggaaaacctagatac
ctatttaaacagcaggaacaacaaatgttaaatagagacacatctcccacatctaaacgc
tcccttaaatttggaatacatatgccacctgtgcaacgcgaaacctctaataatattagc
ccgataaaagccttgaacccttttcagaataagtggtcaataaaaggtcgtgtcacaaac
aagaggaagatgcatcactatagttcaccaaaatcctctgggaaagtatttagctttgac
atgatagatgttgaaggtaccgaaataagaattacttgctttggagacatagtagagatg
cattatcatagggttgaagcaggagcatattattttctatcaaaaggtaccgttagggag
gctaagacaaaatggaataaacttaatagtcatcttgagattactttggaccacaattca
atattgaagcattgtgatgtaactgttgatggtgaagtaaatgcttcacggttcaccccg
atcaatgacatcacgtattgtagcaacaacactttggttgatgttattggtgttgtggtt
tatgttggaaaaccgtcaataatttgtagaaaagatggaaccacagtaaaaaagagggct
atcaaaataaatgacatgtcaagttttagtatcgatgttaacttatggggggctgcatgg
gaagggttaggtgaagacttgaagaatatgcatgcaacccaaacagttgtggtccttgcg
gtcagcaatgctcgtgtcggttatttcaatggaaaggtgatcaacaccattgcggcaacc
actttgaatataaacccttctagcccggaagcagattcccttgtatcgagaggaaacatt
ccagttgaccttttaacactatcttgtgttgctgggcaacttaactcaccatacagtaga
atgacaatcgcatccgttttagaacgtatgaatgttctctccgaaatagttgaaactact
attagagttgttgtcagattcataaaaaacttattctttttgctatcctgcctgcccttt
gcaatttaa
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