Cryptomeria japonica (Japanese cedar): 131069099
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Entry
131069099 CDS
T10556
Name
(RefSeq) zinc finger CCCH domain-containing protein 40
KO
K12872
pre-mRNA-splicing factor RBM22/SLT11
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131069099
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjf03041
]
131069099
Spliceosome [BR:
cjf03041
]
Complex B
Other components
Prp19-related factors
131069099
Complex C
131069099
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
STL11_N
RRM_1
zf-CCCH_RBM22
Torus
zf_CCCH_4
zf-CCCH_2
RRM_YTH1
zf-CCCH_12
zf-CCCH
zf-CCCH_3
RRM_3
RRM_occluded
zf-CCCH_4
zf-CCCH_10
zf-CCCH_PARP12
Motif
Other DBs
NCBI-GeneID:
131069099
NCBI-ProteinID:
XP_057860392
LinkDB
All DBs
Position
1:complement(372358597..372388309)
Genome browser
AA seq
466 aa
AA seq
DB search
MAHRLLRDTEADGWERSDFPIICESCLGDNPYVRMTKANFDKECKICTRPFTVFRWRPGR
DARYKKTEVCQTCSKLKNVCQVCLLDLEYGLPVQVRDTALAINTNDAIPKSDVNREYFAE
EQDRKARAGIDYESSYGKARPNDTILKLQRTTPYYKRNRAHVCSFYVRGECTRGAECPYR
HEMPVTGELSHQNIKDRYYGVNDPVAAKLLNKAGEMSSLAPPEDEGIKTLYVGGLDQRVT
EDDLKDHFYGYGEIESIRLVFQRACAFVTYTTREGAEKAAENLSNKLVIKGLRLKLLWGK
PQVPKPEVENQGDQSAKLISHSGMLPRSIVSQHQSQEQPQSSQDQPSVHYFNIPAPPPPS
ERAFYPSMDPQRMGAVAPAPDTGSSKQGTTNEIQEGQPSQQTLYGPSSGSYYAPQHSQEG
QYHHYYGPPYGPPPPYQQYAAYHPAPPPPPPPPPPPPHQSYYPPQF
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atggctcacaggctgctgcgggacacggaggcagatggctgggagcgatctgatttcccc
atcatatgcgagtcctgcctcggcgataacccctatgtcagaatgacaaaggcaaatttt
gataaagagtgcaaaatttgcaccagacctttcacagtttttagatggaggccaggccgt
gatgcaaggtacaagaaaacagaggtttgccagacatgcagcaagttgaaaaatgtttgt
caagtgtgtctgcttgatcttgagtatggattgcctgtccaagtccgggataccgctttg
gccattaacacaaatgatgctattccaaagagtgatgttaacagagaatattttgcggag
gagcaggatcgaaaggctagagcaggtatagattatgagtcatcatatggaaaggcccgt
ccaaatgatacaatattgaagcttcaaagaacaacaccatattacaaaagaaacagagct
catgtttgtagtttctatgttcgtggtgagtgtacacgaggtgccgaatgcccttatcga
catgagatgcctgttacaggggagctttctcaccagaatattaaggatcgatattatgga
gtaaatgatccagttgcagcaaagctcttgaataaagctggtgagatgtcatctcttgct
cctccagaagatgagggtataaagaccttgtatgttggtgggctggatcaaagagttacc
gaagatgatctgaaggaccacttctacgggtatggtgaaattgaatccatcagactagtt
tttcagcgagcgtgtgcatttgtgacatatactaccagggaaggggctgagaaggcagca
gagaatttgtccaacaagcttgttattaaagggttgaggttaaagctattgtgggggaaa
ccacaggttcccaaaccagaagttgaaaaccagggagatcaatctgcaaaacttatttct
catagtgggatgcttccaagatctatagtatcgcagcatcagagtcaagagcagccacag
agtagtcaggatcagccatctgtacattacttcaacattcctgccccaccacctccctct
gaacgagctttctatccatccatggatcctcagagaatgggagctgttgctcctgcacca
gacactggcagcagtaagcaaggcacaacaaatgaaatccaggaagggcaaccttcccag
caaactctttatggcccttccagtggttcatattatgcaccccagcattctcaagagggg
caatatcatcattactatggtcctccttatggacccccacctccatatcaacaatatgca
gcatatcacccagctcctccaccaccaccaccaccaccaccaccaccacctcatcagtca
tattatcctccacaattttaa
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