Cryptomeria japonica (Japanese cedar): 131069550
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Entry
131069550 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131069550
03420 Nucleotide excision repair
131069550
03430 Mismatch repair
131069550
03440 Homologous recombination
131069550
03460 Fanconi anemia pathway
131069550
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131069550
03032 DNA replication proteins [BR:
cjf03032
]
131069550
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131069550
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131069550
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131069550
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131069550
MMR (mismatch excision repair)
131069550
DSBR (double strand breaks repair)
HR (homologous recombination)
131069550
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
CDC24_OB3
SH3_Rv0428c
Motif
Other DBs
NCBI-GeneID:
131069550
NCBI-ProteinID:
XP_057861033
LinkDB
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Position
3:complement(790406009..790407169)
Genome browser
AA seq
386 aa
AA seq
DB search
MHYHRVEAGTYYTISKGCIKEANTKWNKLNSHLEITLDSNSVLKRCDAVVDSQGNNSRFT
PINEITYCTNNILVDVIGIVVAVGEPSLIRRKDGSEVTKRIVKINDISTFTVDVNLWGAT
WQGVGEDLKNMHATQTTVVLAVKNARVGYFNGKVINTTIATTIAINPYIPETETLISRGK
IPDDLLTLSCVAGQLNSQYSRMTITAVLERTSLLSETVETTIRAAVRIIKTDSFCYPACP
LKINGKECKNKCVQQNDNVSFCSRCQTHVPECNYKYLLQMKLQDHTGTLWATAFDEVGTN
LLQISTKDLYMLQYDLTTKRTPQTIIKGVLLSSFVFTLSITTDMYNSKPRLKATVTKVTN
INFQAECTLLLAEIARMSTATVFSTN
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atgcattatcatagggttgaagcaggaacatattatactatatcaaaaggttgcattaaa
gaagctaacacaaaatggaacaagcttaacagtcatcttgagataactttggacagcaat
tcggtattgaagcgttgtgatgctgttgttgatagccaaggaaataattcacgtttcaca
ccgattaatgaaattacatactgcaccaacaacattttagttgatgttattggtattgta
gttgctgttggagaaccctcattaattcgcagaaaagatggcagcgaagtaacaaagaga
attgtcaaaataaatgatatctcaacttttactgtcgatgttaacttatggggagcaaca
tggcaaggggtgggtgaagatttgaagaacatgcatgcaacccaaacaactgttgtcctt
gcagtcaaaaatgcccgggttggttatttcaatggaaaggttattaacacaaccattgca
acaactatagctataaacccttatatccctgaaacagagacacttatatcaagaggaaag
attccagatgaccttttaacactgtcttgtgttgctggacaacttaactcacaatacagc
aggatgacaatcacagctgttttagaacgtacaagtcttctctctgaaacagttgaaact
actatcagggctgctgtgagaatcattaaaactgattctttttgctatccagcctgccct
ttgaaaattaatggcaaagagtgtaaaaataaatgtgtccagcaaaatgataatgtatcg
ttttgttcaagatgccaaactcatgtgccagaatgcaattacaaatacttattgcagatg
aagctccaagatcatacaggcactctttgggctactgcctttgatgaggttggcacaaat
ttgctgcaaatatctaccaaggacctttacatgctgcagtacgatttaactacaaagaga
acacctcagactattatcaagggtgtccttttatctagctttgttttcacactttctatt
acaacagacatgtacaattcaaagcccaggctcaaagcaacagttaccaaagtcacgaat
atcaatttccaagctgaatgtactcttcttcttgcagagattgctcggatgagcacagct
acagtgttctcgactaattag
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