Cryptomeria japonica (Japanese cedar): 131069683
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Entry
131069683 CDS
T10556
Name
(RefSeq) protein PAT1 homolog
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131069683
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131069683
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
131069683
mRNA degradation factors
5'-3' decay
Decapping complex
131069683
SSDB
Ortholog
Paralog
GFIT
Other DBs
NCBI-GeneID:
131069683
NCBI-ProteinID:
XP_057861183
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Position
11
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AA seq
815 aa
AA seq
DB search
MDNVHDTAHAQSTDSAEDSKDLDTFEQTRSAIARFDASQYAFFGKEVTQEVELGGLEEED
ETSQLGVLDDDGLSSVCDRDEENEQSEVLSEADDMSELSSSFTKMNRVSGETSLHGSLGD
SGLESRKYTSAPEWLRETEISNWLDPQILDAEIDKEGNKWWQPQPPSPAPEPKPLYRHSS
YPPPAWSGDPSFPPSFNSYPPPRSHALQNQLRHRSSPGQASQVSLPGSPHISHFPGPQPH
LGAILPNMMPFGGGVSQFNASAHVIGARPPQGLWLNQPNMRPGGPTGMIPNMMHQQMPQA
LLQQQQQQRFQAMQGVPHFPPIQTQVFNSHPSSPSMMHKFGETLLAGDFRDPRSSKSQQR
GRQNQRNYQHNSEANSQSSRINSGWPQFRSKYMSAEEIETIVRMQLTATHSNDPYVDDYY
HQAVQAKKAVNSRGKSQFAPSYLRDLPSRTKAAAEPHAFLQVDALGRVPFSSIRRPRPLL
EVDTPSTPNASGDNISEPKLSERPLEQEPMLAARIVIEDGLCLLLDVDDIDRLLQVSPPQ
DGGVQLKRRRQILLEGLAASLQLVDPLGSDKSGHSIGLAPKDDFVFLRLVSLPKGRKLLS
KYLQLLTPGNELARIVSMAVFRHLRFLFGGLPADSSASATTTSLARTVAVCVDTMDLSSL
SACLAAVVCSSEQPPLRPLGSSAGDGASVILKSVLERATELLTDPRAPQSRSNRNLWQAS
FDAFFGVLTKYCTNKYDSITQSLILTSGNTAAISSVAAIAMSKEMPVELLRASLPHTNEQ
QRKLLLDFAQRSVPIGGFNSQSGGGGHVSTASVPG
NT seq
2448 nt
NT seq
+upstream
nt +downstream
nt
atggataacgttcatgatacggcacacgctcaatcgactgattctgcggaggattcaaaa
gatctggacacttttgaacaaacccgctccgctattgcaaggtttgatgcatcacaatat
gccttttttgggaaggaggttactcaggaggttgaactaggaggtttggaagaagaagat
gagaccagccaactgggtgtacttgatgatgatgggttgtcctcagtttgtgacagggat
gaggagaatgaacagtctgaggttctatctgaagctgatgatatgtctgagctgtcaagt
tccttcacaaagatgaacagggtatctggagaaacaagtctccatggaagtttaggagat
tcgggacttgaaagcaggaaatatacctcagccccagaatggctgcgggagacagagatt
tccaactggttggatccacagatattggatgcagagattgacaaagaaggaaataaatgg
tggcagccacaaccaccgtcccctgcaccagagcctaaaccattgtaccggcattcatca
tatcctcccccagcatggtcaggagatccaagttttcctccatctttcaattcatatcct
ccaccaaggtcacatgctttacaaaatcagctgcgacacaggtcatcgccaggacaagca
tcacaggtctctttgcctggctcacctcacatctcacattttcctggaccccagcctcat
ttgggagcaattttgcctaatatgatgccgtttggaggaggggtatctcaattcaatgct
tcagcccatgttattggtgcacgacctccacaaggtctctggttgaatcaacctaacatg
cgcccaggaggtccaacagggatgatacctaacatgatgcatcagcaaatgccccaggca
ttgctgcagcagcagcagcagcagcggtttcaggcaatgcaaggtgtacctcattttcca
cccatacaaacacaagtgtttaattcccatccctcttccccttccatgatgcacaaattt
ggtgaaactctcttggctggggatttcagggatccacgcagtagcaagtcccaacaacgt
ggaaggcaaaatcagcgaaactatcaacataattcagaggcaaatagtcaatcaagcagg
attaacagtggctggccacagttcagatcaaaatatatgtctgcagaagaaattgaaacc
attgtacgaatgcaacttaccgctactcatagcaatgatccatatgtagatgattattat
catcaggctgtgcaagctaagaaagctgtaaattctcgagggaaaagtcagtttgcacct
tcttatctacgggatttaccttcacgcacaaaagctgctgcagagccacatgcattcctt
caggtagatgcacttggaagagtaccattttcttctattcgtagacctcgtccactactg
gaagtggacacaccttccacacccaatgcatcgggtgataacataagtgaaccaaagttg
agcgagaggccccttgaacaggagccaatgctggcagccaggattgttatagaggatgga
ctgtgcctcctccttgatgttgatgatattgatagacttttgcaagtatctccacctcaa
gatggtggggtccaattaaaaagaaggcgacagattttattggaaggcttagctgcatct
ttgcaattagttgatcctcttggatcagataaaagtggtcattcaattgggttagcacca
aaggatgactttgtctttttacgtttggtttctcttcccaagggtaggaaacttttgtca
aaatacctgcagcttctgacacctggaaatgaacttgcacgaattgtttctatggctgtt
ttccgtcatttgcgtttcttgtttggtggcttacctgcagactccagtgcttctgcaact
acaacatctcttgctaggactgttgctgtgtgcgttgacaccatggatttaagttccctt
agtgcttgcttagcagcagtagtttgttcttcagagcaaccaccacttcgtcctcttggc
agttctgctggtgacggtgcatctgtcattctaaagtctgttctagaaagagctactgaa
ctcttgacagatccccgtgctccacagtctagatcaaatagaaatctttggcaggcatct
tttgatgctttttttggtgtactcacaaagtattgtacaaataaatatgacagtatcacc
cagtctctgattttgacatcaggaaacacagctgcaattagttcagttgcagctattgcc
atgagcaaggagatgcctgtggaacttctgagggctagtcttcctcacaccaatgagcag
caacgcaaacttcttctggattttgctcaaagatcagtgccaataggtggcttcaactct
cagagtggtggtggtgggcatgtgagtactgcatcagtccctggttga
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