Cryptomeria japonica (Japanese cedar): 131070817
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Entry
131070817 CDS
T10556
Name
(RefSeq) cullin-4
KO
K10609
cullin 4
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03420
Nucleotide excision repair
cjf04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
131070817
09124 Replication and repair
03420 Nucleotide excision repair
131070817
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cjf04121
]
131070817
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131070817
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cjf04147
]
131070817
Ubiquitin system [BR:
cjf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Cullin
131070817
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
131070817
TCR (transcription coupled repair) factors
Cul4-CSA complex
131070817
Exosome [BR:
cjf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
131070817
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cullin
Cullin_Nedd8
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
131070817
NCBI-ProteinID:
XP_057862458
LinkDB
All DBs
Position
11:23404451..23483966
Genome browser
AA seq
809 aa
AA seq
DB search
MSHLKRPIIGGGNNNSNSSGNNISVGNSPAMKKPKSQQSVMYSFDKNGVQHYASAEDGML
VDLKNDGSSASTTTTAANLSRKKATPPQPGKKLVIKPFKEKPKIPTNFEEITWAKLKEAV
TAIHLKQPVSCSLEELYQAVEDLCLHKMAGNLYSRLQQECEANISATLQSLVGQSPDPVV
FLSLVEKCWQDLCDQMLMIRSIALYLDRTYVIQTSNIRSLWDMGLQLFRKHLSLCTEVEH
KTVTGLLRLIEKERMGEAVDRTLLNHLLRMFTALGIYADSFEKPFLEGTAEFYASEGVRY
MQQSDVPDYLKHVEARLHEEHERCLLYLDAITRKPLVATAEKQLLERHISAILDKGFNLL
MDANRISDLQRMYSLFSRVNALESLRQALSAYVKATGHGIVMDEMKDKDMVSSLLDLKAR
LDTIWEDSFFKNEAFSNTIKDAFEHLINLRQNRPAELIAKFLDEKLRSGNKGTSEEELEN
TLDRVLVLFRFIQGKDVFEAFYKKDLAKRLLLGKSASIDAEKSMISKLKTECGSQFTNKL
EGMFKDIELSKEINESFKQSSQARTKLPSGIEMSVHVLTTGYWPTYPPMEVSLPHELNVY
QDIFKEFYLSKYSGRRLMWQNSLGHCVLKAEYPKGRKELAVSLFQTVVLMLFNDAQRLSL
QDIKDATGIEDKELRRTLQSLACGKVRVLQKQPKGRDVEDDDQFLFNEDFNAPLFRIKVN
AIQMKETVEENASTTERVFQDRQYQIDAAIVRIMKTRKVLSHTLLITELFQQLKFPIKPT
DLKKRIESLIDREYLEREKSNPQIYNYLA
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacttaaagcggcccattatcggcgggggcaacaacaacagcaatagcagcggc
aataatatcagtgttggtaatagtccggctatgaaaaaacctaagtcacagcagtcggtt
atgtactctttcgataaaaatggagttcaacattatgcttcagcggaggacgggatgctc
gtggatctcaagaacgacgggtcctctgcgtctacgaccaccaccgctgccaatttgtcg
cggaagaaggctaccccaccgcagcccggaaaaaaattggtcatcaaaccctttaaagag
aaaccaaagataccgactaattttgaagagattacctgggcaaaacttaaagaagctgtt
actgccattcatttgaagcaaccagtgtcttgcagccttgaggaactttatcaggctgta
gaggacctttgtctacacaaaatggcagggaatctttacagtcggcttcaacaggaatgt
gaggcaaacatctctgcaacattacagtctttggttgggcagagtcctgatcctgtagtg
tttctgtcacttgtagaaaaatgttggcaggatctttgtgatcagatgctgatgattcgt
agcattgctctataccttgatcgcacatatgttatacaaacatcaaatattcgttcactt
tgggacatgggattgcaactattccggaagcacctatccttatgcacggaggttgaacat
aagacagtaactggccttttgagattaatagagaaagagaggatgggtgaagcagttgat
aggactcttctgaatcatcttttgaggatgttcactgccctaggtatttatgcggatagt
tttgaaaaaccattccttgagggcactgcagagttttatgcatctgagggtgtgagatat
atgcagcaatctgatgttcctgattacttgaagcatgttgaggctagattgcatgaagag
catgaacgctgcttgctttacttggatgcaataactagaaaacctttagtagccactgca
gaaaagcaactcttggagcgtcacatctctgcaattctggataagggattcaatttgcta
atggatgcaaatcgcatttccgaccttcaacgaatgtactccctgttttcaagggtgaat
gctcttgagtcactgcggcaggctctcagtgcatatgttaaagctactggacatggaatt
gtaatggatgaaatgaaagataaagatatggtgtcttcactcctagacttgaaggctcgc
cttgatacaatatgggaagatagctttttcaaaaatgaagcattttctaataccatcaag
gatgcctttgaacacctcattaaccttcgtcagaatcgacccgcagaacttattgctaag
tttcttgatgagaagcttcgatctggtaataagggtacttcagaggaggagctggagaat
actctggatagggttctggttttgttcaggtttattcaaggaaaagatgtatttgaagca
ttttataagaaggatcttgctaaaaggttgctcttgggtaaaagtgcatctattgatgca
gagaagtcaatgatttctaagcttaagacagagtgtggtagccagttcacgaacaaactt
gagggaatgttcaaggatattgaattatcgaaggagatcaatgagtcattcaaacagtca
tcacaggcaaggacaaagcttccatcaggaattgaaatgagtgtgcatgttttaacaact
gggtattggccgacatatccaccaatggaagttagtcttcctcacgagcttaatgtttat
caggacatcttcaaagaattttatttgagtaagtatagtggccgtcgtttaatgtggcaa
aattctctaggccactgtgttctcaaagcagaatatccaaaaggcagaaaggaacttgct
gtgtctctttttcagactgttgttttgatgctctttaatgatgcacaaaggctaagcctt
caggatattaaggatgcaaccggcatagaagataaggagctccggaggactctacaatct
cttgcctgtggaaaagtcagggttctccaaaagcaacccaagggaagagatgtagaggat
gatgaccaatttttgtttaatgaggattttaatgcaccacttttccggataaaggttaat
gcaatccaaatgaaagagactgtagaagagaatgcaagtactacagaacgagtgttccag
gatcgtcaatatcagattgatgctgcaatagtgcgtattatgaagacgcggaaagtgctt
agtcatacgcttctgattacagagctttttcaacagttaaagttcccaatcaagcctaca
gatttgaagaaaaggattgaaagccttattgatagggagtatctggagagagagaagagc
aatcctcaaatatataattaccttgcgtag
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