Cryptomeria japonica (Japanese cedar): 131070896
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Entry
131070896 CDS
T10556
Name
(RefSeq) tRNA pseudouridine synthase 1 isoform X1
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
cjf03016
]
131070896
Enzymes [BR:
cjf01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
131070896
Transfer RNA biogenesis [BR:
cjf03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
131070896
Prokaryotic type
131070896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
Motif
Other DBs
NCBI-GeneID:
131070896
NCBI-ProteinID:
XP_057862544
LinkDB
All DBs
Position
1:complement(375605123..375610122)
Genome browser
AA seq
706 aa
AA seq
DB search
MENTGLENSVLGTSEEQKCRGVEEEAKTQTEEGNKRPRDHPQMIDTQLPTNAPPQDEDEE
EEEKVAKVPKLSSREETAEETKEESSAAPHRPPKPKRRKIAILVVYCGVGYQGMQKNPGA
KTIEGDLEEALFKAGAISEDHYGNPKMVDWTRSARTDKGVSAAGQIVSGRFVIEPPGFVS
RVNSHLPEQIRVLGFKRVTPSFSAKKFCDRRRYEYVLPVFALDPSAHRDRESVLASEGKE
GALVKCLECSERGRKVVGVMGRKNEYGTRGLNGIVEGNVNDDALNEQILGKHNEMALGNV
NENEITVEILGKHDEVALRNVNNNEINEKFLGEHNDTALGNVHNNEINGATLGEHDEMTL
GNVNNNEINEENLENHEKMIVETLTNNEIRDLALEKCGMVKTVVNNGESSERTLKILDGM
VVEAVNDNELNEKTGNPSEMNTGDGVHVASPDKQSNNLESAPSLSGLEQVSSLKRSEPQK
VPVGQIDGSAMKSSFCYGEKERDKFNNILKQYVGTHNFHNLTTRTTAEDPSANRYILSFE
ASDIFTIDGMDFVRCVVMGQSFMLHQIRKMMGLAVAVMRGCAPESIIATALRKDVRMNVP
TAPELGLFLDECFFPSYNQKWQTTHEEISLKGFEQQILDFKQKYIYKHIASTEVKDGVVA
LWLHSLNQRNYPDFIASKESLKLQNVTESVILSPKEGMADTEVLVN
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatacgggtctggaaaattctgtgttgggaacatctgaagagcagaaatgtaga
ggtgtggaggaagaggcaaaaacccaaacagaagaaggtaataaaagacccagagatcac
ccacaaatgatagacactcaactcccaacaaatgcacctccacaagatgaagatgaagaa
gaagaagagaaggttgcgaaggttccaaagctcagcagtagagaagagactgcagaggaa
accaaagaagaatcgagtgcggccccacaccgtcctccgaagccaaagaggagaaaaatt
gccattttagtggtatactgtggagttgggtatcaggggatgcagaagaatccaggggcc
aaaacaatcgagggtgatttggaggaagctctgttcaaggccggggcaatctcagaagac
cactacgggaatccaaagatggtggactggacgaggtctgcaaggactgacaagggggtt
agtgctgcaggccagatagtttctgggagattcgttattgagcctccagggttcgtgtcc
agggttaattcccatttgccagagcagattagagtacttgggttcaagagggtcactcca
tcttttagtgccaagaagttctgtgacagaagaaggtatgagtatgtccttcccgttttt
gctttggatcctagtgctcatagggatagagaaagtgttttggctagcgagggtaaggag
ggggcactggttaagtgcttagagtgttctgaaagaggccggaaggtcgtgggtgttatg
ggtagaaagaatgaatacggtactaggggcctcaatggaatagttgaggggaatgtaaac
gatgatgcattgaatgagcaaattctcgggaaacataatgaaatggctctgggaaatgta
aatgagaatgagatcactgtggaaattttaggaaaacatgatgaggtggctctgagaaat
gtgaataataatgagatcaatgagaaatttttaggagaacacaatgatacggctctagga
aatgtacataataatgaaatcaatggggcaactttaggagaacatgatgagatgactctg
ggaaatgtgaacaataatgagatcaatgaggaaaatttggaaaatcacgagaagatgatt
gtggaaactctgactaataatgaaatacgtgatctagctttggaaaaatgtgggatggtt
aagactgttgtaaacaatggtgaatcgagtgagagaactttgaagattctggatgggatg
gttgtggaagctgtgaatgataacgaactcaacgagaaaactggaaacccctctgaaatg
aacactggtgatggtgttcatgttgcaagccccgataaacaatccaacaatttggagtca
gcaccgtctctttctggtctggagcaagtctcttctctgaaaagatctgaacctcagaag
gttccagtagggcagattgatgggtcagccatgaagagcagcttttgctatggggagaag
gaaagagataaatttaacaacatcttaaagcagtatgttggaactcataattttcacaat
ttaacgacccgtacaacggctgaagatccctcagcaaatcgctacattctgtcttttgag
gcaagtgatattttcaccattgacggcatggattttgtgagatgcgtagttatgggacag
agttttatgcttcatcagatacgcaaaatgatgggtctggctgttgctgtgatgcgaggt
tgtgctccagagtccataatagccacagctcttagaaaggatgttcgtatgaatgtacct
acagctcctgaactgggattgtttctggacgagtgcttctttccttcctataaccagaaa
tggcaaactacacatgaggagatctctctgaaaggatttgagcaacaaatattggatttc
aagcagaaatacatatacaaacacatagcatccactgaagttaaggatggagtagtagcc
ttgtggttgcattctcttaatcagcgaaattacccagattttattgcttcaaaggaatca
ctgaagcttcaaaatgtgacagagtctgtcatactcagccccaaggaaggcatggctgac
acggaagtgctcgtaaattaa
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