KEGG   Cryptomeria japonica (Japanese cedar): 131070906
Entry
131070906         CDS       T10556                                 
Name
(RefSeq) replication factor C subunit 3
  KO
K10756  replication factor C subunit 3/5
Organism
cjf  Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030  DNA replication
cjf03410  Base excision repair
cjf03420  Nucleotide excision repair
cjf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cjf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    131070906
   03410 Base excision repair
    131070906
   03420 Nucleotide excision repair
    131070906
   03430 Mismatch repair
    131070906
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cjf03032]
    131070906
   03036 Chromosome and associated proteins [BR:cjf03036]
    131070906
   03400 DNA repair and recombination proteins [BR:cjf03400]
    131070906
DNA replication proteins [BR:cjf03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    131070906
  DNA Replication Termination Factors
   ELG1-RFC complex
    131070906
Chromosome and associated proteins [BR:cjf03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    131070906
DNA repair and recombination proteins [BR:cjf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     131070906
  Check point factors
   HRAD17(Rad24)-RFC complex
    131070906
SSDB
Motif
Pfam: RFC_C RCF1-5-like_lid DNA_pol3_delta2 AAA Rad17 RuvB_N AAA_lid_RFC1 Mg_chelatase AAA_5 Sigma54_activ_2 AAA_22 DUF815 nSTAND3 AAA_11 ABC_tran nSTAND6 AAA_16 AAA_24
Other DBs
NCBI-GeneID: 131070906
NCBI-ProteinID: XP_057862561
LinkDB
Position
1:complement(380695196..380762861)
AA seq 354 aa
MLWVDKYRPRSLDKIIVHREIADNLKNLVSEHDCPHLLFYGPPGAGKKTLIIALLKQIFG
PGAEKVKVENRPWKIEAGTRTIEVELTTVSSNYHVELNPSDVGFQDKYVVQEIIKEMAKS
RPIDINGNKGYKVLVLNEVDKLSKEAQHSLRRTMELYSGVCRIILCCNSASKVIEAVRSR
CLNVRINAPSKEQIIEVLEYIAKKEGLQLPIGFAGRIAIQSERNLRRAILCFETCRVQQY
PFTDNQPVQPMDWEQYISEIASDIVNEQSPKRLFVVRGKIYDLLVNCIPPEVVLKRLVFE
LMKKLDSELKHEVCHWAAYYEHRMHLGQKAIFHIEAFIAKFMSIYKKFLIATFG
NT seq 1065 nt   +upstreamnt  +downstreamnt
atgctgtgggtagacaagtacaggcccaggtctctcgataagattattgtgcatcgagaa
attgcggacaatttaaaaaatctggttagtgagcatgattgccctcatctactattttat
gggccaccaggagctgggaagaaaactttaatcatagctcttctaaagcaaatatttggt
ccaggggctgagaaggtgaaggtagaaaatcggccatggaagattgaggctggtacaagg
acaattgaagtggagttgacgacagtttcaagtaattaccatgtggaattgaatcctagt
gatgtgggtttccaagataaatatgttgttcaagagattatcaaagaaatggccaagagt
aggcccatcgatataaatggaaataagggttacaaagtattggttctcaatgaggttgac
aaactttctaaagaagctcaacactctcttcgacggacaatggaactgtatagtggagtc
tgccgaataattttatgttgtaatagtgcatcaaaagttattgaagcagttaggtctcgt
tgtttaaatgttcgcatcaatgcaccatcaaaagagcagataattgaagtattggagtat
attgcaaagaaagaaggactacaacttcctataggatttgcaggtcgtatagccatacaa
tctgagagaaacttaagaagagcaatactttgctttgagacttgcagagtgcaacagtat
cctttcactgataaccaacctgtgcaaccaatggactgggaacagtacatttctgagata
gcttcagatattgtgaatgaacagagccccaaaaggctttttgtggtcaggggaaagata
tatgatcttcttgtgaattgcattcctcctgaagtagttttaaagagattggtgtttgaa
ttgatgaagaagttggactctgaattgaaacatgaagtttgccactgggctgcttattat
gaacacaggatgcatcttggacagaaggcaatatttcacatagaagcctttattgcaaaa
ttcatgagcatatacaagaaatttcttattgcaacttttggctga

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