Cryptomeria japonica (Japanese cedar): 131071402
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Entry
131071402 CDS
T10556
Name
(RefSeq) DNA-directed RNA polymerase subunit alpha-like
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131071402
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjf03021
]
131071402
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131071402
Enzymes [BR:
cjf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131071402
Transcription machinery [BR:
cjf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
131071402
DNA repair and recombination proteins [BR:
cjf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
131071402
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
RNA_pol_A_bac
RNA_pol_L
HHH_5
SAM_EPH
RAD51D_N
SAM_2
Motif
Other DBs
NCBI-GeneID:
131071402
NCBI-ProteinID:
XP_057863201
LinkDB
All DBs
Position
6:complement(217050927..217051973)
Genome browser
AA seq
348 aa
AA seq
DB search
MNQNEIAVSMKIPEWKCIEFRTKNKHFHYSRFTLSLLCKGQANTIGSTIRRVLLREVEGT
CITHVKFHNISNEYSVIIGIEESIHEILMNLKEIVLRIDAYRIREGSINVVGPKKVTAQD
IMLPPSVGIIDATQHIANINKSITLDISLQIEKCHRYIIQNPNNYNPKDEIFPIDVAFVF
PIDAAFVFPIDVSFAPVQNVNYSIHSYWSKNETQEILFIEIWMNEAPKEALYEASRNLID
FFLPFLNAKEENNDGTNSLSIDITPSLPILHILNDTKRINFDQMYIVQLNFSTRIYNCLK
KANINTVSDLLNYSREDLMKTKHLGKQSVQEILEFMRNIQIDSLGNPI
NT seq
1047 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagaatgaaatagcagtctcaatgaagataccagaatggaagtgcattgaattc
agaacaaagaataagcattttcattatagtcgtttcactctatctctgctttgcaaaggt
caagctaatacaataggcagcacaataagaagagttttactcagagaagtagaaggaaca
tgtatcacacatgttaaatttcacaatatatcaaacgaatattccgtaataataggtatt
gaagaatcaatacatgaaattttgatgaatctgaaagaaattgtacttcgtattgatgcg
tatagaattcgagaaggatctatcaatgttgttggaccaaaaaaagtaaccgctcaagat
atcatgttaccaccttctgtgggaataattgatgctacacaacatatagctaacataaac
aaatcaattaccttagatatatcattacaaattgaaaaatgccacagatatattatccaa
aatccaaataattacaatcctaaggatgaaatttttcctatagatgttgcctttgtcttt
cctatagatgctgcctttgtctttcctatagatgtttcctttgcccctgttcaaaatgta
aattacagtattcactcctattggagcaaaaatgagacacaagaaattctatttattgaa
atatggatgaatgaagctcctaaagaagcactttatgaagcttctcggaatttaattgac
tttttccttccctttctaaatgcaaaggaagagaacaacgatggaacaaatagtctaagc
atcgatattactccttccttacctattttgcatatattgaatgatacaaagagaataaat
tttgatcaaatgtatattgtccaattaaacttctctactaggatatataattgcctcaaa
aaggcaaatataaatacagtatcagaccttttgaattacagtcgagaagatttaatgaaa
acaaaacatcttgggaaacaatctgtccaagaaatcttggaatttatgcgaaatattcaa
attgattcactagggaatccgatttag
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