Cryptomeria japonica (Japanese cedar): 131071600
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Entry
131071600 CDS
T10556
Name
(RefSeq) serine/arginine-rich splicing factor SR45a isoform X1
KO
K12897
transformer-2 protein
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131071600
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
cjf01009
]
131071600
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjf03041
]
131071600
Protein phosphatases and associated proteins [BR:
cjf01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
131071600
Spliceosome [BR:
cjf03041
]
Common components
Common spliceosomal components
SR proteins
131071600
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_DEAH11
RRM_5
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
131071600
NCBI-ProteinID:
XP_057863488
LinkDB
All DBs
Position
11:392655388..392683407
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AA seq
217 aa
AA seq
DB search
MADSPRRRYSSSPSPRRMRSRSRSRSPGRQHRGNNDAHNPGNTLYVTGLSTRVTEKELED
HFSREGKVVDCRLVVEPRTRISRGFAFITMENVEDAERCIKYLNQSILEGRYITVEKSRR
KRPRTPTPGNYLGVKSTREVGSYHDRDRRRSYHGRDGYSSYQSPHRSPYYDGQGYSPRRS
PYRGGGYRRERTRSPPYSPYGSPIRSRGHRTYSDRSR
NT seq
654 nt
NT seq
+upstream
nt +downstream
nt
atggcagattcaccccgaagaaggtattcttcatcaccttcacctcgtcggatgcgctcc
agatctagatctcgcagccctggcaggcaacatcgaggaaataatgatgcacacaatcct
ggaaataccctatatgtgactggcctctctactcgtgtaacagaaaaggaacttgaagat
catttctcaagagaggggaaggttgttgattgccgtctggtagttgaacctcgtaccagg
atctcacgtggttttgcatttataacaatggaaaatgttgaggatgctgaaagatgtata
aaatatttgaatcagtcgattcttgagggtcggtacatcacagtggagaagtcaaggagg
aagcgcccaaggactcctacacctggaaactatcttggggttaaaagtacccgggaagtt
ggctcctatcatgatcgtgatagacgccgaagttatcatggtcgtgatggttatagctct
taccagtctcctcatcgctctccttactatgatggacaaggatattctccacgtcgctct
ccttaccgaggtggtggatatagaagagagcgtactcgttcaccgccttattctccctat
gggagtccaattcgcagccgaggccatcgcacctattctgacagatctagataa
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