Cryptomeria japonica (Japanese cedar): 131071617
Help
Entry
131071617 CDS
T10556
Name
(RefSeq) FACT complex subunit SSRP1 isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
cjf Cryptomeria japonica (Japanese cedar)
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131071617
03036 Chromosome and associated proteins [BR:
cjf03036
]
131071617
Transcription factors [BR:
cjf03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
131071617
Chromosome and associated proteins [BR:
cjf03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
131071617
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
POB3_N
SSrecog
Rttp106-like_middle
HMG_box
HMG_box_2
HMG_WDHD1
HMG_box_5
CDC45
CHDNT
DUF7256
Motif
Other DBs
NCBI-GeneID:
131071617
NCBI-ProteinID:
XP_057863515
LinkDB
All DBs
Position
11:complement(387376573..387530784)
Genome browser
AA seq
648 aa
AA seq
DB search
MADGHQFNNILLGGRGGMNPGQLRIHSGGIIWRKQGGGKVVEVGKPDIVSLSWTRIPKGY
QLAVKSKAGLNVKFNGFREQDVSNLTSYMTNTMGVTPEEKHLSISGRNWGEVNLEGNMLT
FLVGSRQAFELSLADVSQTQLQGKNEVVLEFHVDDTTGANEKDTLMELSFHIPNTNTTFA
GDDTTPPAQVFREKIMSMADVGPSGAEAVALFEDIAILTPRGRYTVELHISFLRLQGQAN
DFKIQFSSVIRLFMLPKSPHTLVVITLDPPIRKGQTFYPHIVLQFAMEEIAECALSMNEE
LLNTKYKDKLEPSYKGLSHEVFTQILRGLSGAKVTRPGKFRSSQDGYAVRASLKAEDGIL
YPLEKSFFFLPKPPTLVLHDEIEYLEFERHGAAGTSSMSSHYFDLHIRLKSEQEHQFRNI
QRNEYHNLFNFINSKGLKIMNLGDGQGTGGVASVLENSDDEAVDPHLERIKNAIDAGGGE
ESDEEDEDFVAEKDDAGSPTEGSEEEESDASESAENKERVAKKEVKKKEATAPKVTATKR
KKKDEEEDGGKKRKQKKKKDPNAPKRAMSGFMFFSQIERENIKKNNPGMPFTEVAKALGE
RWKKMSVEEKEPFESKARADQKRYKNAMADYKSGPTNNIDSGNESDSE
NT seq
1947 nt
NT seq
+upstream
nt +downstream
nt
atggcagacggccatcaatttaacaatattttactcggaggtagaggtggcatgaatcca
ggtcagctgaggattcattcaggaggcataatatggagaaagcagggtggagggaaggtg
gtggaagtggggaaacccgacattgtaagcttgagttggaccaggattcccaagggttac
caattggctgtcaaatcgaaagctggattgaatgtcaagtttaatggctttcgtgaacag
gatgttagtaatttgacaagctacatgacaaataccatgggggtaactccagaagagaaa
catctttctataagtggacgcaattggggggaagttaacttggaaggaaacatgcttaca
tttttggttggttcaagacaagcttttgagttgtccttggcagatgtatcacaaacacaa
cttcaagggaagaatgaggtcgtcttggaattccatgtggatgatacaacaggagccaat
gagaaagacactctgatggaattaagttttcatataccaaatactaatacaacatttgct
ggggatgataccacccctccagcacaggttttccgagagaaaatcatgtcaatggcagat
gtaggaccatcaggtgcagaagctgttgcactgtttgaggatattgctatcctcactcct
agaggtcgttacactgttgagctccatatttctttcttgcgtctccaagggcaagccaat
gattttaaaattcagttcagcagtgttatccgcctttttatgcttccaaagtcaccgcat
acgcttgtggttatcactcttgatccaccaattcgcaagggtcagacattttatccacat
attgtcttgcagttcgcaatggaagaaatagctgagtgtgcactttcaatgaatgaagag
ctgttaaataccaagtacaaggacaagcttgagccttcatataaggggttatctcatgaa
gtgttcacacaaattttgcgtggtctttctggtgcaaaagttactcgaccagggaagttt
cgtagcagtcaagatggatatgcggttagagcatccctcaaggctgaagatgggatttta
tatcctcttgaaaagagttttttcttcttgccaaaaccaccaacacttgttcttcacgac
gagattgaatatctggaatttgagagacatggtgctgctggtactagcagtatgtcttct
cactactttgatcttcatataagacttaagagtgaacaggaacaccagtttcgtaacatt
cagcggaatgaatatcataatcttttcaacttcatcaattccaagggtttgaaaattatg
aatctaggagatgggcaaggtactggtggagttgcatctgttcttgagaattctgatgat
gaagctgtggatccacatcttgaacgaataaaaaatgcaatcgatgctggtggtggtgaa
gagagtgatgaagaggatgaggactttgtagcagagaaggatgatgcaggatctccaaca
gaaggttcagaggaagaagaatcagatgctagtgaaagtgcagaaaacaaagaaagggtt
gcaaagaaagaagtgaagaaaaaagaggcaactgctcctaaagtaactgcaacaaagagg
aaaaagaaggatgaggaagaagatggtggaaagaagaggaagcagaaaaaaaagaaggat
ccaaatgcaccaaagagagctatgtctggctttatgttcttttcccaaattgaaagagag
aatatcaaaaagaacaatccgggaatgccattcacagaggttgcaaaggcgcttggagag
agatggaaaaagatgtcagtggaggagaaagagccatttgagtcaaaagccagggctgat
cagaaaagatacaagaatgcaatggcagattacaaaagtggaccaactaataatatagat
tctggaaatgaatctgacagtgagtag
DBGET
integrated database retrieval system
