Cryptomeria japonica (Japanese cedar): 131071751
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Entry
131071751 CDS
T10556
Name
(RefSeq) ATP-dependent helicase BRM
KO
K11647
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 2/4 [EC:5.6.2.-]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
131071751
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjf03021
]
131071751
03036 Chromosome and associated proteins [BR:
cjf03036
]
131071751
Transcription machinery [BR:
cjf03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
131071751
Chromosome and associated proteins [BR:
cjf03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
REST complex
131071751
Chromatin remodeling factors
BAF complex
131071751
PBAF complex
131071751
GBAF(ncBAF) complex
131071751
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
Bromodomain
ResIII
DEAD
QLQ
HDA2-3
AAA_14
AAA_22
RNA_pol_Rpb2_5
Motif
Other DBs
NCBI-GeneID:
131071751
NCBI-ProteinID:
XP_057863679
LinkDB
All DBs
Position
8:603883529..603916703
Genome browser
AA seq
2323 aa
AA seq
DB search
MQSAAASQQQGLQGGVPPCRSSSSSSPENSSSSSPAAASLPTSRPGFESMQQQNHHHQQQ
NHHNQHQQQQHQQQQNFRQQQQLLRKSQGDEGLLTYQAGNLQGIVVGSGVSGPVGPTQMS
QQARNFMDLAQQQQVASQLQGEGQAKNQNQMNAHAYLQFALQAAQHKARANIQSQQQGKA
AAIGSTVVDQELLNNLKHQELMRLQAANQAQMSMFKKSPGQFMQMDKHMEQGQTSNDVRN
ETKTQQVQVAQLPGNVGRPGHGLQNQHPMQSLSNNQYANLAQLQALQAWAMDKNIDISSP
ANAHLIPQLLIQWQARIAALQKANDGNLAAHQARLLPGKSDIASSSVQGYAPPSNPSTSH
SNSMPEVHAVQGGLQLHQKPRQAVATGSASAVGSPAMANPNVTQMQHTMPQVGDYQVDRV
NRHQNPATSTMASIHGLSSSPSVGQVGDSSVPKNAQVSPESLQMQYYRQLHQFHRPPMHP
AGLNEGSTSTHLSNPPVNHPAPVQQQYGFTKHQLIVLRAQILAFRRLKRGESTLPPDVIR
AIVPPPLQPQQGQTVAVPKEKNFNQNAADQPRAVDPSDAQRFVAPNKGTNVLKEERDVKE
PLMSEERKPTSNAFPGIVVSGKEVSPVVVSEKEEKINKTPVKMEQEAEQVTQVNTPTTSE
LPVDRSKTIVSKPPQDVSAQVKKHPGGNTAQVPKDMNIIKKYHGPLFDFPPFGKKLNSFL
PTNLNGSNGGYSLSIGYDVKDLLFEEGKDVLNKKRTENLKKIERLLAVKLDRKRIRPDLV
VKLQIEERKLRLLDLQARIRDELDQEQQEIMAMPDRPYRKFVRLCERQRADLARQVQLSQ
KAIKEKHLKAVFQWRKRLFEAHWSIRDARTTRNRGVAKYHEKMLKEFSKRKDEDRNKRME
ALKNNDVDRYRQMLLEQQSQIPGDAQERYLVLSSFLSQTEEYLQKLGGKITAAKAHQEVE
EAAIAAAAAARAQGLSEEEVKAAAACAGQEVKTRNRFSEMNASRNNMSINKYYNLAHAVN
EKILRQPSMLRAGTLRDYQLVGLQWMLSLYNNKLNGILADEMGLGKTVQVMALIAYLMEY
KGNYGPHLIIVPNAVMVNWKSELHNWLPTLSCIYYVGSKDQRVRLYSKEVCAMKFNVLVT
TYEFIMRDRAKLSRVDWKYIIIDEAQRMKDRESQLSRDLDRFRCQRRLLLTGTPLQNDLQ
ELWSLLNLLLPEVFDNRKAFHDWFSKPFQKDAPSQSSEDDWLETEKKVIIIHRLHQILEP
FMLRRRVEDVEGSLPPKISVVLRCKMSALQGAVYDWIKATGSLRLDPQTEARRVESNPKR
QIRAYVPLQNRCMELRKVCNHPLLSYPYRQDYSNDYMVRSCGKLWVLDRILIKLHRTGHR
VLLFSTMTKLLDILEEYLQWRRLQYRRIDGTTSLEDRESAIGDFNKPGSECFLFLLSIRA
AGRGLNLQSADTVVIYDPDPNPKNEEQAVARAHRIGQKREVKVIYMEAVVETITSYQKED
ELRTGGTVDDEDELAGKDRYMGSVESLVRNNIQQYKIDMADEVINAGRFDQRTTQEERRV
TLETLLHDEERYQETVHDVPSLQEVNRLIARSKEEVELFDQMDEELNWPGEMLRHHQIPK
WLRVGSLEVNAAVSSMSKQAMKRGLVVPIGTKEEEDRLCAMYPSPAPEKKLENMKTNSNK
RLPRSESNSKKQLPHKHRDIAAVNNEGEDSEDSLEEKDGSSTHEEEGEIREDLEDEENSR
AAGPEPNDRVQSEEETEIECDEGDNELSKAMDVAEKIVREGIEREAASSESSFQNGKLNT
RQASSPTISAQKFGSLAALEAKPVGHPKSMVEELEEGEIVASGDSHMDFQHSGSWVHERE
DGEEEQVLQPKIKRKRSMRNRPRPNSDKLEEKPNVEKRVLHPGNFYQQNSNQASYDYGRQ
LGLNKEVGAFSESVYDKSEHWGANLKRKQLVQSRVDDGLPETIAVSKQHVLPKHNRVNGF
VEPNQDATEYPRERRDSKLMHSGGSPNCIGGGHMAEIYQKRCKIVLDKLQAAINKSGGLI
TVLFSELPKRNENPGYYRCVVNPIDARTIEQRLDRYEYASVLDFAADVQLVLDNAGRYSS
EVKPDARRYQAIFFQRMALAFPDVDFSFVKTRSLVSLGQSATPSTSSPKQQLNPSRLLKS
QDGLSLASDSGAGKYLAPRNSSAVSEEMREKATLKENISKMPKETRVMFADRAQDRERGK
GDEVDEVTHPGDFVICKKKRKDRDKVVVKPRMVNQAPDITQAVRGLPQKDILLPGHARQA
QGWPQFASTEKNGTSGLDTEDVQWAKPVKRLRTDTGKRRPSHI
NT seq
6972 nt
NT seq
+upstream
nt +downstream
nt
atgcaatccgcagcagcatcccaacagcaggggctgcagggtggcgtgcccccctgccgc
tcctcctcttcttcttcacctgagaattcatcttcgtcttctcctgctgctgcttctttg
cccacatctcgtccagggttcgaatccatgcaacagcagaatcatcatcatcagcagcag
aatcatcataatcaacatcagcagcagcaacaccaacagcaacagaattttcgtcagcag
caacagcttctacggaagtctcagggagatgaaggacttctcacttatcaggctggtaac
cttcaggggattgttgtgggtagtggtgttagtgggccagttggtccaacacaaatgtca
cagcaagcaagaaattttatggatttagcccagcagcagcaggtagcttcccagcttcaa
ggtgaggggcaggcaaaaaatcaaaatcaaatgaatgcccatgcctacctccagtttgca
ttgcaggctgcccagcacaaagctcgtgctaacatccaatctcaacagcaggggaaagca
gctgcaattggttcaactgtagtagaccaggaactcttaaacaatttaaaacatcaagag
ttaatgcgtcttcaagcagcaaaccaggcacagatgtctatgtttaagaagtcacctggt
caatttatgcagatggataagcacatggagcagggacaaacaagtaatgatgtgagaaat
gaaacaaagacccagcaggtgcaggtggctcagttaccaggcaatgtaggaaggccaggg
catgggcttcaaaatcaacatccaatgcagagtctttcgaataaccagtatgcaaatctt
gctcaactacaagctcttcaggcttgggcaatggataagaatattgatatttcttctcct
gcaaatgcacaccttattccccaacttttgatccagtggcaagcccgcatagcagcatta
caaaaagccaatgatggtaaccttgctgcacatcaggctcgtctcttaccaggaaaatca
gatattgcttcttcttcagtccagggttatgctcctcctagtaatcccagtactagccat
agcaattctatgcctgaagttcatgctgtccagggaggtttgcaattgcatcaaaagcct
aggcaggctgtggcaactggatcagcatcagcagtagggagtccagcaatggccaatcca
aatgttactcagatgcaacacacaatgcctcaggttggagattatcaggtggatagggta
aataggcatcagaatcctgctacaagtactatggcctctattcatggactgtcctcatct
ccttctgtaggtcaggtgggagactcttcagtaccaaagaatgcccaggtttctccagaa
tctttacaaatgcaatattataggcaattgcatcaattccacagacctcccatgcacccg
gcaggtttgaatgaaggatctacatcaactcatctttcaaatccaccagtaaatcatcca
gcaccagttcaacagcagtatgggtttacaaaacatcaattgattgttcttagagctcaa
atactagcctttaggcgactcaagcgaggtgaatccacacttcctcctgatgttattcga
gcaattgttccacctcctcttcagcctcagcaaggccaaactgttgcagtacctaaagag
aagaattttaatcaaaatgctgcagatcaaccaagggctgtagatccaagtgatgcacaa
cggtttgtggctccaaataaagggacaaatgtgctcaaagaagagagagatgtgaaagag
cctctaatgagcgaagagaggaaaccaacgtcaaatgcattcccagggatagttgttagt
ggaaaggaggtctcaccagtagtagtttcggagaaggaagagaagattaataaaacccca
gtaaaaatggaacaagaagctgaacaagtcacccaggttaatacacccacaacaagtgaa
ttgcctgttgatagaagtaagactattgtatcaaaacctcctcaagatgtatctgctcag
gtgaagaagcatcctggtggaaacactgcacaagttcctaaggatatgaatatcattaag
aagtaccatggtcctctgttcgactttccaccatttgggaagaaattaaattctttcttg
cccacaaatttgaatggtagtaatggaggatattcactatctataggatatgatgtaaag
gatttattgtttgaagagggtaaagatgttcttaataaaaaaaggacagaaaatctaaaa
aagatagaacgattattggcagtgaaactggataggaaacggattagacctgatctagtg
gtgaagctacaaatagaagagcggaagctacgtcttcttgatcttcaggctcgaataagg
gatgaactagatcaagagcagcaggagataatggctatgcctgataggccatatcgcaag
tttgttcgcctatgtgaacgacaaagggcagatcttgccagacaagttcaactttctcaa
aaggcaataaaagagaaacatttaaaagctgtgtttcaatggcgcaaaaggttatttgaa
gctcattggtcaattcgtgatgctagaaccactcgcaacagaggggttgctaaatatcat
gaaaaaatgctgaaggagttttctaaaaggaaagatgaagaccggaataaaagaatggag
gctctgaaaaataatgatgttgacaggtaccgtcagatgttgttggaacagcaaagtcag
atcccaggtgatgctcaagagcgatatctagttctttcttctttcttgtcacagacagag
gaatacttgcaaaaacttggaggaaaaatcactgctgcaaaagcacatcaagaggtggaa
gaagctgcaattgctgctgctgcagctgcccgtgcacagggtctttcggaagaggaggtt
aaagcagcagcagcctgtgcaggacaggaggtgaagacaaggaatcgattttcagaaatg
aatgcttctaggaacaatatgtccataaacaagtactataatttggcacatgctgtaaat
gagaagattttaagacagccgtctatgctgcgtgctggaacgttgcgtgattaccagctt
gttgggttgcaatggatgctttctttgtacaacaataagttaaatggaattcttgcagat
gaaatgggtcttgggaagactgtacaggtaatggctttaatagcttatcttatggagtac
aaggggaattatggtccacatctcataattgtgcccaatgcagtcatggtcaactggaag
agtgaactgcataattggcttcctacattgtcctgcatttattatgtgggcagtaaggat
caacgagtgcgactctattctaaggaggtttgcgctatgaagtttaatgtacttgtcaca
acgtatgagttcattatgagagatcgggcaaagctttcaagggtggactggaaatatatc
attattgatgaggcacagcgaatgaaagacagggaatcacaactttcacgtgatttagat
aggtttaggtgtcaaaggagattgcttcttactggaacaccattgcagaatgatttgcag
gaactgtggtcccttttgaacttgcttctacctgaagtatttgataatcggaaagctttt
catgactggttttctaaaccctttcaaaaggatgcgccatctcagtcttctgaagatgat
tggcttgaaactgagaagaaggttatcataatacacaggttgcatcagatattggagcct
ttcatgcttcggcgccgagttgaagatgtagaagggtcccttccgcccaagatatctgtg
gtattgcgctgtaaaatgtcagcccttcagggtgctgtttatgattggattaaagcaaca
ggcagtcttaggcttgatccacagactgaagccaggagagtagaaagcaatccaaagcga
caaattagggcgtatgtaccattgcagaacaggtgtatggagttgcggaaggtctgtaac
caccccttactaagttacccttatcgccaagattattctaatgattatatggtgcgatca
tgtggaaaactttgggtccttgatagaattcttatcaaactacacagaacaggccaccgt
gtgctcttattcagtactatgacaaagctgcttgatatattagaagaatatctccaatgg
cgacgtcttcagtatagaaggattgatggcacaacaagtcttgaagacagagagtcagca
attggtgattttaacaagcctggttctgaatgcttcctatttctactgagtattcgtgca
gcaggaaggggtttgaatcttcaatcagcagacactgtggtcatatatgatcctgatcct
aacccaaaaaatgaagaacaagctgtggctagagctcatcgaattggtcagaagagagaa
gtcaaagttatatacatggaagctgttgttgaaaccataacaagctaccagaaagaagat
gaactccgaacggggggcactgtggatgatgaggatgagcttgctggtaaagaccgatat
atgggctctgtagaaagccttgttcgtaacaatattcagcaatacaaaattgacatggca
gatgaagtcataaatgcagggcgttttgatcaaaggacgacacaagaggagaggcgtgtg
acactagagactcttttgcatgatgaagaaagataccaagaaactgtccatgatgttcct
tcattgcaagaagtaaatcgtttaattgctagaagcaaagaggaagtggaactgtttgac
cagatggatgaggagttgaattggccaggtgagatgttgagacaccatcaaattccgaag
tggcttcgtgtgggttctttagaagtaaatgctgctgtcagttccatgtccaagcaggca
atgaagaggggattggtggtgccaattggtaccaaggaggaggaggataggttatgtgct
atgtatcccagtcctgcccctgaaaagaaattggagaacatgaaaacaaattcaaacaaa
agacttcctagatctgaatcaaatagcaaaaagcagctacctcataaacatagagatatt
gcagctgttaataatgaaggggaagacagtgaagatagcttggaagagaaagatggttcg
tcaacgcatgaagaggagggagaaattagggaggatttagaagatgaagagaatagcaga
gctgctggccctgaacctaatgatagggtccaatctgaagaagaaactgaaatagaatgt
gatgagggcgacaatgagttatctaaagccatggatgttgccgaaaagattgttagggaa
ggtatcgaacgcgaggctgcatcctccgagtcctcatttcaaaatggaaagttaaataca
cgtcaggcttcttcccccacaatatctgcccagaagtttggatctttggctgccttagaa
gcaaaacctgtgggacatccaaaatcaatggtggaagagcttgaagaaggtgaaattgtt
gcatctggcgattctcacatggacttccagcattcaggaagttgggttcatgagcgtgag
gatggtgaagaggaacaagtcttgcagccaaaaattaaaaggaagcgtagcatgcgcaat
cgtcctagacctaattcagataagctggaggaaaagcctaatgttgaaaagcgagtattg
cacccgggaaacttctaccagcaaaattctaatcaggcaagttatgattatggacgacag
ctaggactaaataaagaagttggagctttcagtgagtctgtctatgacaagtctgaacat
tggggtgccaaccttaagaggaagcagcttgtgcaatcaagagttgatgatggtctgcca
gagacaattgctgtttcaaagcaacatgttctgcctaagcacaatagagtgaatgggttt
gttgaacctaaccaagatgccacagaatatcctagagaaagacgagattccaaactgatg
cactcaggtggatctccaaattgtattggaggggggcacatggcagagatctatcagaaa
aggtgcaagattgttctcgacaaacttcaagctgcaataaataagtctgggggactcata
acagtacttttttcagagcttcccaagagaaatgaaaatccaggatattataggtgtgtt
gttaatcccattgatgcacggacaattgagcaacgccttgaccgttatgaatatgcaagt
gtattggactttgctgctgatgtgcaattggttctggacaatgctgggcgttattcttct
gaggttaagccagatgcaaggaggtatcaagctatattctttcagcgtatggctctggcc
tttcctgatgttgattttagttttgtcaaaacacgaagcttggtttctcttgggcagtca
gcaacaccatcgacatcatctcccaagcaacagttaaacccttctcggcttctcaagtcg
caggatggtctgagtctggcatctgattcaggtgctgggaagtatttggcaccacgtaac
agtagtgctgtaagtgaggagatgcgggagaaagcaacactgaaagaaaatatttccaaa
atgccaaaagaaactagggtgatgtttgcagatcgggcacaagacagggaaagaggtaag
ggagatgaagtagatgaagtgactcatcctggtgattttgttatttgcaaaaagaagcga
aaagatagggataaagtagtagtaaaacctaggatggttaaccaagcacctgacattact
caggctgtaagaggcttgccacagaaagatatcttacttcctgggcatgctagacaggct
cagggatggccccaatttgctagtactgaaaagaatggtactagtgggcttgatactgaa
gatgttcagtgggctaaacctgtgaagaggttgaggacagatactggcaagaggaggccc
agtcatatttga
DBGET
integrated database retrieval system
