Cryptomeria japonica (Japanese cedar): 131072128
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Entry
131072128 CDS
T10556
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03013
Nucleocytoplasmic transport
cjf03015
mRNA surveillance pathway
cjf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131072128
09122 Translation
03013 Nucleocytoplasmic transport
131072128
03015 mRNA surveillance pathway
131072128
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131072128
03041 Spliceosome [BR:
cjf03041
]
131072128
03009 Ribosome biogenesis [BR:
cjf03009
]
131072128
03012 Translation factors [BR:
cjf03012
]
131072128
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
131072128
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
131072128
mRNA cycle factors
Stress granule specific factors
131072128
Spliceosome [BR:
cjf03041
]
Complex C
Other components
EJC/TREX
131072128
Ribosome biogenesis [BR:
cjf03009
]
Eukaryotic type
90S particles
Helicases
131072128
Translation factors [BR:
cjf03012
]
Eukaryotic type
Initiation factors
eIF-4
131072128
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
Cas3-like_C_2
AAA_30
UvrD-helicase
Helicase_RecD
Motif
Other DBs
NCBI-GeneID:
131072128
NCBI-ProteinID:
XP_057864176
LinkDB
All DBs
Position
11:300849612..300865861
Genome browser
AA seq
411 aa
AA seq
DB search
MAGAGTGGGGGRNRNPGRNAEDDEKLIFETSPGVEAISSFDQMGIRDDLLRGIYQYGFEK
PSAIQQRAVMPIITGRDVIAQAQSGTGKTSMIALTVCQMIDTSIREVQALIVSPTRELAA
QTEKVILAIGDFINVQAHACIGGKSIGEDIRKLEYGVHVVSGTPGRVCDMIKRRTLRTRA
IKLLVLDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPHEILEMTNKFMTDPVRIL
VKRDELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMRSN
NFTVSSMHGDMPQKERDAIMAEFRAGTTRVLITTDVWARGLDVQQVSLVINYDLPNNREL
YIHRIGRSGRFGRKGVAINFVRNDDIRILRDIEQYYSTQIDEMPMNVADLI
NT seq
1236 nt
NT seq
+upstream
nt +downstream
nt
atggcaggagcaggaacaggtggaggcggcgggagaaaccgaaacccagggcgcaatgcg
gaggacgatgagaagctaatattcgagacaagccctggtgtagaggcaatctccagcttc
gaccagatgggcatccgcgacgatcttcttcgcggcatatatcagtacggcttcgaaaag
ccttccgccattcagcagagagccgtcatgcccatcatcaccggccgcgatgttattgca
caggctcagtctggtacgggcaagacgtccatgatcgccctcaccgtctgtcagatgatt
gatacctctattcgcgaggttcaggcattaattgtttcacccactagagaacttgcagct
cagacagagaaagtgattcttgcaataggagattttataaatgttcaagctcatgcatgt
attggtggcaagagcataggggaagatattagaaaactggaatatggtgttcatgtggta
tcaggaacccctggaagagtctgtgatatgatcaaaaggaggacattaaggactagagct
atcaaactgcttgtccttgatgaatccgatgagatgctcagcagaggattcaaggaccaa
atatatgatgtttatcgatatcttcccccagagcttcaggttgtgctgatatctgcaact
ttaccacatgagattttggagatgacaaacaaattcatgactgaccctgtgcggatcctt
gtcaaacgtgatgaattgacactcgagggcatcaaacaattttttgttgctgttgaaagg
gaagaatggaaatttgacaccctatgtgatctctatgatacacttacaatcactcaagct
gttatattttgcaatacaaaaagaaaggttgattggcttacagaaaagatgcggagcaat
aactttactgtatcatctatgcatggagatatgccacaaaaagaacgtgatgcaattatg
gccgaatttcgtgctggtactactcgggtcttgatcaccacagatgtttgggctcgtggt
cttgatgttcagcaggtttcgttagtgataaactatgaccttcccaacaatcgtgagctt
tacattcataggattggtcgctcaggtcgttttggtcgaaagggtgttgctataaatttt
gttcgaaatgatgatataagaattctgagagatattgagcagtattatagtacccaaata
gatgaaatgcccatgaatgtggcagatctaatctga
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