Cryptomeria japonica (Japanese cedar): 131072271
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Entry
131072271 CDS
T10556
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog isoform X1
KO
K10683
BRCA1-associated RING domain protein 1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
131072271
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131072271
04121 Ubiquitin system [BR:
cjf04121
]
131072271
03036 Chromosome and associated proteins [BR:
cjf03036
]
131072271
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131072271
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
131072271
Ubiquitin system [BR:
cjf04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
131072271
Chromosome and associated proteins [BR:
cjf03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
131072271
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
131072271
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
BRCT
BRCT_2
zf-HC5HC2H
zf-C3HC4_2
zf-C3HC4
zf-RING_2
zf-RING_UBOX
RTT107_BRCT_5
zf-C3HC4_4
zf-RING_5
zf-RING_6
zf-HC5HC2H_2
zf-C3HC4_3
PTCB-BRCT
zf-rbx1
zf-Nse
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
131072271
NCBI-ProteinID:
XP_057864391
LinkDB
All DBs
Position
11:295815218..295821735
Genome browser
AA seq
1062 aa
AA seq
DB search
MAKTRSLQGAERSPRTNSNLSQNTSAMAEASTASHLDKMGRELKCPICLSLLDQAASLTC
NHVFCNACILRSIKSASVCPVCKVPCSRREVRLAPHMDSLVIIYRNMKIAAGVKLIGSSP
CMPKDSRDDPDKENITPCQSGLKRKLSVKSGGKPKKAKGCGLKPSRLSVVSSHQVIENTT
TENIEREFPAQAIPSPHQPVKHSFPTKKRVQVSLYPPGSVEESPLRPVSKLSNSEDKVSQ
SEEGGVNGNMLLTSLDNMHFDSDGQTCLQSEPRACVTVQNSIKDAPVNDRVLLDEHGNPL
LAPFFWLREREIEEADGTQMPNSQPTQLTQITQASPTVCPSFSDLKDSDDEGYHRELQND
EHNTGITVPDTFDSEMFEWTQRPCSPELNSSPIKQQMQSPKASEVVQLAPKLLEGDGALL
ANGVNKIHEGIIPVNTIENANGSDMERKQESVKDNSNKNANVETAGLPNKPSWKENVKLL
SGDEQSCHKRKKSGNVRPETEAVSENAVGKKKRGRKPKRISDRNLHCEGFSHVRDSVVSG
DANEPLPDSDKELAFTAADIFDVMFGLPTNKSATDGSVSKTNGDTEIRDQEFHHPLDISS
TAQNKVREHLALTLTQECQHGVGSIVIGGNLETTLADTTELQPEAIGNCFGSESSTLKNE
FVCVFCQTSGDSEAAGQMMHYSNGRAITKAKEMPPNVVHVHKFCAEWAPVVYFKGDCIMN
LETEASRGIKIKCSMCGLKGAALGCCFTKCHRSFHVPCALSNTECRWDIDDYVMLCPSHS
SRKFPKEKKSKTLKQDSTLCTRGKKTRTEATPCRGTQISASILAGSEPRQRWTWPSGLSC
KWVLCGSALDTAQKETLNNFANLIGATISKTWSPAVTHVIASTDANGACRRTLKFLMAIL
EGKWILNIDWITSCLKEGSPVLEEGFEITHDIHDTYDGPKRGRLRVEKQEPKLFEGLSFY
LCGEFAASLKGYLQDLVSAAGGVVLHRKPIMDQPDCHSTIVLYNVELPEIKKHTEKLEGT
SVRSRLKQAKSLADALGAQFAAHTWVLESIAASQLQPTSNGC
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
atggctaagacgaggtcattgcaaggagcagagcgcagcccccgtaccaattcaaattta
tcacaaaacacaagcgccatggcggaggcttccactgcatcacacctcgacaaaatgggc
agagaactcaaatgcccaatctgcttgagcttgctggatcaagcagcttcactcacctgc
aaccatgtgttttgcaatgcttgtattctaaggtctataaaatctgcatctgtatgtccg
gtttgcaaagtgccatgttcacgtagagaggttcgtcttgcacctcacatggatagctta
gttatcatatataggaatatgaagattgccgctggtgttaaacttattggttcatcacct
tgcatgccaaaagattctagagatgacccagacaaggagaatataactccttgtcaaagt
ggtctcaagcgaaaactgtctgtgaaatctgggggaaagcccaagaaggctaaaggatgt
ggtttgaaaccttctcgattgtcagtggtttcatctcatcaagtaatagaaaacacaacc
acagaaaatattgaacgagagtttcctgctcaagctattccgagtcctcatcagcctgtg
aagcattcattcccaacaaagaagagggttcaggtctctttatacccacctggtagtgtt
gaggagtcacctcttagacctgtaagcaagctttccaactctgaagataaggtatcccaa
agtgaggaaggaggtgttaatggaaatatgcttttgacaagtttggataatatgcatttt
gattctgatggtcagacatgtctccaatcagaacctagagcatgtgtgactgttcaaaat
tccatcaaagatgctcctgtgaatgatagggtcctacttgatgaacatgggaatccttta
ctagcgccctttttttggctcagagagcgtgagattgaagaagctgatggcacgcagatg
cctaattctcaacccacgcagttaactcaaattacacaggcatcacccactgtgtgtcca
tcttttagtgatctcaaggattctgatgatgaaggttaccatcgagagcttcaaaatgat
gaacataacactgggatcacagttcctgacacctttgatagcgagatgtttgaatggact
cagaggccctgctcacctgagctcaactctagcccaataaaacaacagatgcagtctccg
aaagcatctgaggttgttcagttggcacccaagttactggaaggagatggtgcattactt
gccaatggtgtaaacaagatccacgagggaattattccagtcaatactattgaaaatgca
aatggatctgatatggaaaggaagcaggaatcagttaaagacaacagtaataaaaatgct
aatgttgaaactgcaggcttgccaaataaaccgtcctggaaagaaaacgttaagctttta
agtggtgatgaacaaagttgccataaaagaaagaaaagtggaaatgttaggcccgagaca
gaagcagtcagtgaaaatgcagttggcaagaagaagagagggaggaagcctaaaaggatc
agtgacaggaatcttcactgtgaagggttctctcatgtgagggattctgttgtcagcgga
gatgccaatgagcctctgccggattcagataaggagttggcttttacagcagctgatata
tttgatgttatgtttggcttgcccacaaataagtctgcaactgatggttctgtatcaaag
acaaatggtgacaccgaaattagagatcaggaattccaccatccattagatatttccagt
actgcccaaaataaagtacgtgaacatttggctctaactttaacacaagagtgccaacat
ggtgttggaagcattgtcattggtggtaatttagagactacactagctgacacaactgag
ctgcagccagaagccattggaaattgttttggaagtgaatctagcacattgaagaatgaa
tttgtctgtgttttttgtcagacttctggcgattcagaggctgcaggtcagatgatgcat
tacagcaatggaagggcgataactaaagcaaaagagatgccaccaaatgttgtacatgtg
cataagttctgtgccgaatgggcaccagttgtctacttcaaaggtgattgtataatgaat
cttgagacggaagcatcaagaggcataaaaatcaagtgcagtatgtgtggactgaaggga
gcagctcttggttgctgttttacaaagtgccacaggagctttcatgttccttgtgcacta
tctaacacagagtgcagatgggatattgacgattatgttatgctttgcccttctcattca
tcacgcaaatttccgaaggagaaaaagtctaaaaccttgaagcaagatagcaccctttgt
acaagggggaaaaagactcgtacagaggcaacaccctgcagaggtacccaaatctctgct
agtattcttgcaggttccgaaccaaggcagagatggacatggccgtcaggcctgtcttgc
aaatgggttttgtgtggttctgctcttgatactgcccagaaggaaactctaaacaatttt
gcaaatcttatcggtgcaactatctctaagacatggagtccagctgtaacccatgtaatt
gcatctactgatgcaaatggtgcttgtagaagaacgctgaaatttctgatggcaatcttg
gaagggaaatggatactgaatatagattggatcacatcatgcctcaaagaggggtctcca
gttcttgaagagggattcgaaataactcatgatattcatgacacctatgatggaccaaag
cgtggccgactgcgtgttgagaaacaggagccaaaactgtttgaagggctaagcttttat
ctctgtggtgagtttgctgcctctttaaaaggctaccttcaagatttggtttcagctgca
gggggtgttgttctacacaggaagcctataatggaccagccggattgccatagtacaatt
gtgctttacaatgtggaacttccagaaataaagaagcatactgagaaacttgagggtaca
tccgttcggagcaggctcaagcaagctaagtccctagcagatgctttaggagctcaattt
gctgctcatacatgggtattggaatctatagctgcttcccaactgcagcccacatctaat
ggctgctga
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integrated database retrieval system
