Cryptomeria japonica (Japanese cedar): 131073555
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Entry
131073555 CDS
T10556
Name
(RefSeq) coatomer subunit alpha-1
KO
K05236
coatomer subunit alpha
Organism
cjf Cryptomeria japonica (Japanese cedar)
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
cjf04131
]
131073555
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
cjf04147
]
131073555
Membrane trafficking [BR:
cjf04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
131073555
Exosome [BR:
cjf04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
131073555
Exosomal proteins of bladder cancer cells
131073555
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WDR55
WD40_CDC20-Fz
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR36-Utp21_1st
WD40_Gbeta
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_SPT8
Beta-prop_WDR41
Beta-prop_IFT122_1st
NBCH_WD40
Beta-prop_WDR19_1st
Beta-prop_Aladin
Beta-prop_IFT140_1st
Fis1_TPR_C
WD40_like
ENTH
DUF6956
Motif
Other DBs
NCBI-GeneID:
131073555
NCBI-ProteinID:
XP_057865987
LinkDB
All DBs
Position
10:186894081..186900333
Genome browser
AA seq
1213 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHPKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKMRRCLFTLLGHLDYIRTVNFHNEYPWIVSASDDQTIRIW
NWQSRVCISVLTGHNHYVMCASFHLKEDLVVSASLDQTIRVWDISSLRKKTVSPADDILK
LTQMNTDLFGGGDAVVKYVLEGHDRGVNWASFHPSLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHINNVSCVLFHARQDIIVSNSEDKSIRVWDMSKRTSVQTFRREHDRFWILSAHP
EVNLLAAGHDSGMIVFKLERERPAYVVFGGSLLYFKDRYLRTYDFATQKDNPLIPIRRPG
SSGPNQGPRSLSYSPTENAVLICSDVDGGAYELYVVPRDSLGRSDTVQEAKRGTGGSAVF
IARNRFAVLDKSHNQVNIKNLKNEVTKKCNLPFSADTIFFAGTGNLLCRSEDSVILFDLQ
QRTNLGEIHVPNVKYIVWSNDMENVALLSKHAIIIASKKLSHRCTLHETIRVKSGAWDDN
GIFIYSTLNHIKYCLPNGDSGIIRTLDVPVYITKVSGSSLYCLDRDGKNRVIQIDTSECV
FKLALMKKKYDEVMSMIRNSQLCGQAIIAYLQQKGFPEVALHFVRDERTRFNLAVESGNI
QIAVASAKEIDEKEHWHKLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNLDKLTK
MLRIAEIKNDVMGQFHNALYLGDIKERIKILQESGHLPLAYVTASVHGLMDIADTIAADL
GGNLPTLPSGKKSSLLMPPVPIVRGGDWPLLTVTKGIFEGGLENSAAAYEEEDEGNVADW
GDDIAIENTERENGEVIMADDKEAIGGEDEDGGWEMEELELPQDAATSNVGITHNTLFVT
PTQGMPVSQIWIQKSSLAGEHAAAGNFDTALRLLNRQLGINNFSPLKSIILDLYMGSHVF
LPALASAPVVPLAVEKGWSDTGSPNVRGPPALVYSLSVVEEKLRVAYRATTEGKFSEALR
LFVNILHTIPVIVVDTRKEVDDVKELIGIAKEYVLGLRMEVKRKEIKDDPLRQQELAAYF
THCKLQKVHLRLALLNAMGICYKGGNYSTAANMARRLLETDPPTNHATKARQVLQACERN
LQDAKQLNYDFRNPFVVCGTSFTPIYHGQKSVSCPYCTSRFVPSMSGKLCTICDLSIVGS
DASGLLCSATQAR
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgttgaccaaatttgaaaccaagagcaatagggtaaaggggctaagctttcatcccaaa
aggccatggatccttgctagtcttcacagtggagtcattcagttatgggactatcggatg
ggaactctgatagacagatttgatgagcatgatgggcctgttcgaggagtacattttcac
aaatcacagccattatttgtgtctggaggtgatgattacaagataaaggtctggaactac
aaaatgcgccgatgcctttttacactactagggcaccttgactacattcgcacagttaat
ttccataatgagtatccttggattgttagtgcaagtgatgatcagacgataaggatctgg
aattggcaatctcgagtttgcatatctgttcttactggtcacaatcattatgtgatgtgt
gcctcttttcatctcaaggaggatctggttgtttctgcgtcattggatcaaactattcgt
gtatgggatataagttctttaaggaaaaaaactgtttctcctgctgatgatatcttgaag
ctgactcagatgaacactgatctctttggaggtggtgatgctgttgtgaagtatgttctt
gagggacatgatcgtggtgtaaactgggcctcatttcatcctagcttaccattaattgtg
tctggtgcagatgatcgccaagttaaactttggcggatgaatgatacaaaggcttgggaa
gttgacaccctaagaggacatataaataatgtgtcttgtgtgttgttccatgcacgccaa
gacattattgtttcaaattctgaagataaaagtatccgagtgtgggatatgtcaaagcgt
acaagtgtccaaacttttcgtagagagcatgatcggttctggattctttctgcacatcca
gaagtgaatcttctagcagctgggcatgacagtgggatgattgtcttcaaattggaaaga
gagaggcctgcctatgttgtctttgggggctcactattatatttcaaggatcgttatctg
cgcacttatgattttgcaactcaaaaagacaatccattaataccaattcgcagacctggt
tccagtggcccaaatcaagggccaagatctctgtcatacagtccaacagagaatgctgtt
ttaatatgttcagatgttgacggtggtgcatatgaactttatgttgtgccaagggatagt
cttggcagaagtgatacagtacaggaggcaaagagaggaacaggaggatctgctgtgttc
attgcaaggaataggtttgctgttcttgacaagagccataatcaggttaacataaagaac
ttgaaaaatgaagtgacaaagaagtgcaatcttccatttagtgcagatacaattttcttt
gcagggacaggcaacctgctttgtagatcagaagatagtgtaattctttttgatctgcaa
cagagaacaaacttaggggaaattcatgtaccaaatgtcaagtacatagtttggtcaaat
gatatggagaatgtagccttgcttagtaagcatgcaatcatcattgcaagcaagaagttg
tcacatagatgtactttacatgagactatacgtgttaagagtggggcttgggatgacaat
gggatttttatttactcaactttgaatcacataaaatattgcttgccaaatggagatagt
ggcatcatcaggacgcttgatgttccagtgtacataacaaaggtttctggaagttctctt
tattgccttgatagagatggcaagaaccgagttatacagatagatactagtgagtgcgta
ttcaagttggcattgatgaagaagaaatatgatgaggtgatgagcatgattaggaattct
cagctctgtggacaggccatcatagcttacctgcaacaaaagggatttccagaggtggcc
cttcactttgttagagatgagagaacccgattcaacttggctgtggagagtggaaacatt
caaatagctgttgcttctgcaaaagagattgatgagaaggaacattggcataagctaggg
gttgaagcccttcggcagggtaatgctggtatcgtagagtatgcatatcaaaggacaaag
aattttgagcggctttcatttttgtatctgattactggtaatttagataagttgacgaag
atgttaaggattgctgaaataaaaaatgatgtaatgggccagtttcacaatgcattgtat
ttgggtgacattaaagagcgcatcaagattttgcaggaatctggtcatctaccacttgct
tatgtcactgcatctgttcatggtcttatggatattgctgacacaattgcagctgattta
gggggcaatcttccaactctaccttcaggaaagaaatcatcacttctgatgcctcctgta
cccatcgtgcgtggtggtgattggcctttgcttacggttaccaaaggtatttttgaaggt
ggtttggagaactctgctgcagcttatgaagaagaggatgaaggaaatgttgctgattgg
ggtgacgacattgccatagaaaatactgaaagggaaaatggtgaagttataatggcagat
gacaaagaagctataggaggagaggatgaagatgggggatgggaaatggaggaattggaa
cttcctcaagatgctgctacttcaaatgttggaatcactcacaatactttgtttgtaacc
ccaacacaaggtatgccagttagccaaatttggatacaaaaatcttctcttgctggagag
catgcagctgcaggcaattttgatacagctttgcggttgcttaatcgtcaacttgggatt
aataatttctctccattgaagtctataattttggatctatatatgggtagtcatgtgttc
cttcctgcccttgcttctgcacctgtagtgccattagcagtagagaaaggttggagtgac
actgggagtccaaatgtaaggggtcccccagccttggtatacagtctttctgtagttgag
gagaaactgagagtagcttacagggcaacgacagaaggtaagttcagtgaagcattgagg
ctatttgtgaacattctgcacacaatcccagttattgtagtggacacaagaaaggaagtt
gatgatgtgaaagaattgattggaattgccaaagaatatgttcttggtcttcgaatggag
gtcaagagaaaagaaatcaaagatgatcctctccggcaacaggaacttgcagcttatttc
actcattgcaaactccagaaagttcatttaagactggctttactaaatgcaatgggcata
tgttacaagggtgggaactatagtacagcggcaaacatggcacgccggcttttagaaact
gaccctccaacaaatcatgcaacaaaagctcgtcaagtccttcaggcctgtgagaggaat
ttgcaagatgcaaagcaactaaactatgatttcagaaatccttttgttgtttgtggtaca
agttttactccaatataccatggccagaaaagtgtttcatgtccatattgcacatcacgt
tttgttcctagtatgtctggaaagctttgtaccatatgcgatctgtcaattgtgggttca
gatgcatctggactactttgttctgctacccaagcaaggtga
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integrated database retrieval system
