KEGG   Cryptomeria japonica (Japanese cedar): 131073776
Entry
131073776         CDS       T10556                                 
Name
(RefSeq) DNA ligase 1 isoform X1
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
cjf  Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030  DNA replication
cjf03410  Base excision repair
cjf03420  Nucleotide excision repair
cjf03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:cjf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    131073776
   03410 Base excision repair
    131073776
   03420 Nucleotide excision repair
    131073776
   03430 Mismatch repair
    131073776
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cjf03032]
    131073776
   03400 DNA repair and recombination proteins [BR:cjf03400]
    131073776
Enzymes [BR:cjf01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     131073776
    6.5.1.6  DNA ligase (ATP or NAD+)
     131073776
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     131073776
DNA replication proteins [BR:cjf03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    131073776
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     131073776
DNA repair and recombination proteins [BR:cjf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     131073776
   NER (nucleotide excision repair)
    Other NER factors
     131073776
   MMR (mismatch excision repair)
    Other MMR factors
     131073776
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase HVO_A0114
Other DBs
NCBI-GeneID: 131073776
NCBI-ProteinID: XP_057866254
LinkDB
Position
1:258991973..259183354
AA seq 740 aa
MLRVPILHSITTIRTPFTCRLVSALNPTVLSALSYSRGRALMSAKPMAGKSVADVLMGAA
RAAAEKKGRPPLKHQAKAEEVKKAVIAEEASQNKNVAPPSVDDKIALLTKKAADFDPRAA
AFWKDGDNVPFLFLARALDLISNESGRIAITEILCNAFRTVMATTPGDLLPVVYLSANKV
APAHEGVELGIGDAAIIRALAEAFGRKEDQVKSQMKALGDLGLVAKASRSTQRLMVKPTP
LTCVKVLESFRIIAKESGKESQDKKRARIKALLVAATDCEPQYLVRLLQTKMRIGLAEQT
VLVALGHAAVYSEQPPVSQSQLEEAGKILKHTYSVLPIYDKIVPALLEMGVCKLPEVCKF
TLGVPVGPMLAKPTKGVSEVLDKFQDMKFTCEYKYDGERAQIHYMEDGSVEIYSRNAERN
TGKFPDVVNFIAACKKPSVTSFVLDCEVVAFDREKHKILPFQVLSTRARKGVIISDIKVQ
VCIFAFDMLSLNGQPLLQEQLKKRRECLYNSFEEEAGKFLFATAKESNDLEEIQTFLDEA
VNNSCEGLIIKTLEQDATYEPAKRSHNWLKLKKDYMDSIGDSLDLVPIGAFHGRGKRTGV
YGAFLLACYDEENEEYQSICKIGTGFSEAMLEERSASLRTKVIPNPKSYYRYGEALGVEV
WFEPVEVWEVKAADLSISPIHRAANGVVDPIKGISLRFPRLLRVREDKNPEQATTAEQVA
EMYRAQKINHAGKQGDEDDD
NT seq 2223 nt   +upstreamnt  +downstreamnt
atgttgagggttcccatcctgcactccattacaaccattcgcacgccgtttacttgcaga
ctcgtttcagccttaaatcccactgtcttatcagcgctttcttacagcagaggccgtgct
ttaatgagcgccaaaccaatggccggaaagagcgtggctgacgttctcatgggagccgcc
agggcggccgcggagaaaaagggccgcccgccattgaagcaccaggctaaagcagaagag
gtaaagaaggccgttattgccgaagaagcttcgcagaataaaaatgttgcacccccttct
gtggatgataaaattgcgctgcttacaaagaaggcggcggacttcgacccgagggcggct
gcattctggaaagacggcgataatgtaccatttttgtttcttgcccgtgcactggatttg
atttccaacgagtccggcagaatcgccattacggaaattttgtgcaatgcgtttcgaacc
gtgatggccacaacgcccggggatttgttgcccgtggtttatttatcggcgaataaggtg
gcacctgctcacgaaggggtggagcttggaattggtgatgccgccattattagagcgctt
gccgaggcctttgggagaaaggaagaccaagtcaagagccagatgaaggctttaggagac
ttgggccttgttgcaaaggcaagccgttcaactcagagattgatggtcaagccaactcct
ctaacttgtgttaaagttcttgaatcctttcgtatcatagctaaggaatctgggaaagaa
agtcaagacaagaagcgagcccgcattaaagctcttctcgtagctgctacagattgtgaa
ccacagtacttagttcgtcttctccagacaaaaatgcggataggtctggcagaacaaaca
gtcttagttgcattagggcatgcagctgtgtattctgagcagccaccagtatcacagtca
caactggaagaggctggaaagatattaaagcatacatactcagtgcttccaatttatgat
aaaattgttcctgctttacttgagatgggtgtgtgtaagctaccagaagtttgtaaattt
actctgggagtgcctgtcggacccatgttggccaaaccaacgaaaggtgtttcagaagtt
ttagataagtttcaagatatgaagtttacttgtgagtataaatatgatggggaacgtgca
cagattcattatatggaagatggatccgttgagatttatagccgaaatgcagagcgcaat
actgggaagtttcctgatgttgtcaattttattgcagcatgcaagaaaccatctgtgaca
tcatttgtattggattgtgaggttgttgcatttgatcgggagaagcacaaaattttacct
tttcaggttcttagcactcgtgcccgaaaaggtgtcataattagtgatatcaaagtgcaa
gtatgcatttttgcttttgacatgttgagtctaaatggccagccattattacaagagcaa
ctaaaaaagcgaagagagtgtctgtataattcttttgaagaagaagcagggaagttctta
tttgcaacagcaaaggaatctaatgatttggaagagatccagacatttcttgacgaagct
gtgaataatagctgtgaaggcctgattatcaaaacattggagcaagatgccacatatgaa
cctgccaagcgttcccacaactggttgaagttgaagaaagactacatggacagtattgga
gattctttggatcttgtaccaataggggcgtttcatggacgtggaaaacgtactggagtt
tatggggcatttcttcttgcatgctatgatgaagagaatgaagagtaccaaagtatatgt
aaaataggaacggggtttagtgaggctatgcttgaagaacgatctgctagtttgcgcact
aaagttattccaaatccgaagtcctattatcgctatggggaggcattgggtgtagaggtt
tggtttgaacctgtagaggtatgggaggtgaaagctgcagatttaagcattagcccaata
catcgtgcagcaaatggtgtggttgatcctattaagggaatttctcttcgatttccacgt
ctgctacgggttcgtgaggacaagaatccagagcaagcaacaacagcagagcaagttgca
gagatgtatcgtgcacaaaaaattaaccatgcaggaaagcaaggtgatgaagatgatgat
tga

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