Cryptomeria japonica (Japanese cedar): 131073870
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Entry
131073870 CDS
T10556
Name
(RefSeq) DNA-directed RNA polymerase subunit alpha-like
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
131073870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjf03021
]
131073870
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131073870
Enzymes [BR:
cjf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
131073870
Transcription machinery [BR:
cjf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
131073870
DNA repair and recombination proteins [BR:
cjf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
131073870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
RNA_pol_A_bac
RNA_pol_L
RNA_pol_Rpb1_1
HHH_5
SAM_EPH
RAD51D_N
HHH_3
HHH_2
Motif
Other DBs
NCBI-GeneID:
131073870
NCBI-ProteinID:
XP_057866358
LinkDB
All DBs
Position
9:complement(702314435..702316659)
Genome browser
AA seq
362 aa
AA seq
DB search
MENDKENYNSNFCTQCGVELAIDPRIRRYQMGYIKLACPVVHIWPTAKKPTLLRFQALRP
SKYESWAEKIAYYLSWDFGLVQEREIATGVDFKYSVIIGIEESIHEILMNLKEIVLRSDA
YGIREGSIHVVGPKKVTAQDIMLPPFMRIIDTTQHIANINKSITLDISLQIEKGRRYIIQ
NPNNYNPKDEIFAIDAAFVFPIDAAFAPVQNVNYSIHSYWSENETQEILFLEIWTNGGLA
PKEALYEASQNLIDFFLPFLNAKEENNDGTNSLSDDITPSLPILHISTDTKRIAFDQMYI
DQLNFSTRVYNCLKKANINTVSDLLNYSREDLMKIKHLGEQSVKEILEFIRNIQIDSPGN
PV
NT seq
1089 nt
NT seq
+upstream
nt +downstream
nt
atggaaaatgacaaggaaaactacaactccaatttttgtactcaatgtggagttgaactt
gctattgatcctcgaattcgaagatatcaaatgggatacattaaactagcatgtccagtt
gttcatatttggcccacagctaaaaagccaactttattgcgatttcaggctttacgtcca
tctaagtatgaatcctgggcagaaaagattgcttattatctctcttgggattttgggcta
gttcaagagcgagaaattgccactggagttgatttcaagtactccgtaataataggtatt
gaagaatcaatacatgaaattttgatgaatctgaaagaaattgtacttcgaagtgatgcg
tatggaattcgagaaggatctatccatgttgtcggaccaaaaaaagtaaccgctcaagat
atcatgttaccaccttttatgagaataatcgatactacacaacatatagctaacataaac
aaatcaattaccttagatatatcattacaaattgaaaaaggtcgcagatatattattcaa
aatccaaataattacaatcctaaggatgaaatttttgctatagatgctgcctttgtcttt
cctatagatgctgcctttgcccctgttcaaaatgtaaattacagtattcactcctattgg
agcgaaaatgagacacaagaaattctatttcttgaaatatggacgaatggaggattagct
cctaaagaagcactttacgaagcttctcagaatttgattgactttttccttccctttcta
aatgcaaaggaagagaacaacgatggaacaaacagtctaagcgatgatattactccttcc
ttgcctattttgcatatatcgactgatacgaagagaatagcttttgatcaaatgtatatt
gaccaattaaacttctctactagggtatataattgcctcaaaaaggcaaatataaataca
gtatcagaccttttgaattacagtcgagaagatttaatgaaaataaaacatcttggggaa
caatctgtcaaagaaatcttggaatttatacgaaatattcaaattgattcaccggggaat
ccggtttag
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