Cryptomeria japonica (Japanese cedar): 131074491
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Entry
131074491 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131074491
03420 Nucleotide excision repair
131074491
03430 Mismatch repair
131074491
03440 Homologous recombination
131074491
03460 Fanconi anemia pathway
131074491
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131074491
03032 DNA replication proteins [BR:
cjf03032
]
131074491
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131074491
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131074491
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131074491
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131074491
MMR (mismatch excision repair)
131074491
DSBR (double strand breaks repair)
HR (homologous recombination)
131074491
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
tRNA_anti-codon
CDC24_OB3
DUF223
DUF3087
Motif
Other DBs
NCBI-GeneID:
131074491
NCBI-ProteinID:
XP_059065355
LinkDB
All DBs
Position
1:complement(237816544..237817965)
Genome browser
AA seq
473 aa
AA seq
DB search
MSEDKPSTSKQSLQFATELPSPQTTTSQNITPIKTLNPYQNKWTIKGRVTHKRPIKAYST
TTKNGHVFSFDIVDCDGSEIRITCFDEIAKLHCNRVDIGSHYIISKGSVKETNARYNKLN
NHLEIALSDTSIVKRCTNEEQADQQTSPFTPIGELFQLTNNTLVDVIGLVLYVGDFIPIH
RKDDSQTQKRVVKINDLSSSTIDINFWGPIAEQKGLELKNMLTNDSVVILALRNARVGYF
NGKLVNITVATTLHINPTFPEADLLASRGKDPLLVVPFVAETIHIDGKYTRMTISSMRER
MRIKPKIIQTTLLAILRYVNVNDQNFYYTACPLIVNGRPCKKKCTHQADDSWFCSRCQMS
MQDYNYSYLLPLKLQDAIGTLWSTAFDEGGNHLLLKTARQLYALQNDATTIETTSSVIKR
VQSHYYSFTLLVSTETYNSESKMKVTINKVAPVDFKVECHALLAEISCLSIET
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaggacaaaccatcaacatctaaacagtcgcttcagtttgcaactgaattgcca
tccccacaaacaacaacttctcaaaatataactcctataaaaactttgaatccataccaa
aataaatggacaatcaaagggagagttactcataaacgacctattaaggcatatagcaca
accaccaaaaatggccatgtctttagctttgacattgttgattgtgatggttctgaaatt
agaattacatgttttgatgagatagctaagttacactgtaatcgtgtggacataggttca
cattatattatttcaaaaggatctgttaaggagacaaatgcaaggtacaacaaactaaac
aatcatttagaaattgccttgtctgatacatccatagtaaaacgctgcaccaacgaagaa
caagcagatcaacaaacttctccttttacgcccattggcgaattgtttcaactaacaaat
aatacactggttgacgttattggtcttgttctatatgttggagatttcattcctattcat
aggaaagatgacagtcaaacacaaaaacgtgtggtgaaaattaatgatctatctagttca
acaattgacatcaacttttggggcccaatagcagaacaaaagggcttggaattgaaaaat
atgttgaccaatgatagtgttgttatccttgctttacgtaatgctcgtgttggctatttc
aatgggaagcttgtaaacataacagttgcaacaacattacatatcaacccaacttttcca
gaagcagaccttctagcatcaagaggaaaggaccctttgcttgttgtaccctttgttgca
gaaactatccacatagatggcaaatatactagaatgacaatctcttcaatgcgtgagcgg
atgagaatcaaaccaaaaataattcagacaacattgctagctattctacgctatgtcaac
gtcaatgaccaaaatttctattacacagcttgcccattgatagtcaatggaaggccttgc
aagaaaaaatgtacacatcaagctgatgattcttggttctgctctagatgtcaaatgagt
atgcaagactataattatagttacctcttgcctctaaagttgcaagatgccataggtact
ctatggtccactgcatttgatgagggtggcaatcacttgctactcaaaactgcaagacaa
ctctatgcactacaaaacgatgcaacaacaatagaaacaacttcctcagtgatcaagaga
gtacagtcacattactattcattcacactgctggtttctactgagacatacaattcagaa
tccaagatgaaagtgacgatcaataaagttgctcctgttgacttcaaagttgagtgccat
gcactgcttgcagaaattagctgcctaagtatagagacttag
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