Cryptomeria japonica (Japanese cedar): 131074633
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Entry
131074633 CDS
T10556
Name
(RefSeq) protein PIR isoform X1
KO
K05749
cytoplasmic FMR1 interacting protein
Organism
cjf Cryptomeria japonica (Japanese cedar)
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131074633
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
131074633
Factors involved in mRNA localization
Other mRNA localization factors
131074633
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FragX_IP
CYRIA-B_Rac1-bd
WASH-4_N
Motif
Other DBs
NCBI-GeneID:
131074633
NCBI-ProteinID:
XP_057867270
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All DBs
Position
1:complement(226420928..226737539)
Genome browser
AA seq
1308 aa
AA seq
DB search
MAVPLEDAVAALSTFSLEDDQPDVQGLSVILSTGRCATQSPIGGYEDVPAYRLSLMEDTK
SINQLNVLVQEGKEMAAVLYTYRSCVKALPQLPDSLKQSQADLYFETYQVLDLEISRLRE
IQRWQASAASKLAVDMQRFSRPERLINGPTITHMWSMLKLLDVLLELDHLKNAKASIPND
FSWYKRTFTQVSSQWQDTDSMREELDDLQIFLSTRWAILLNIQVELFRVNNIEDILQMLI
IFCIESLETVSALLFSERHALLRVLPVLVVLATSSEKEGDTIFKKIKITRLINIFKRDPV
IPAFPDLHLAPATMLKELSSYFQRFSSHSRLISLPAPHEIGPREALEYQRHYSVLHHIGM
IRSEHDDFALRFAAAKNQLLLLKSSQGIDLERNREVKCNMYGIVVEGFQILSRWIGHVWE
QCAWKFSRPSKDSIPLDPDDRSANVSDYEKVVRCNYSYEERRAMVELTSYIKGIGAMMQK
SDTVIADALWEAIHAEVQDFVQNKLAIMLRTTFKKKKDLSRILSDMRTIAADWMANTIRP
ETHQNASRRGGDDNNGVSFQPRPVAPTAAQVHCLQFLIHELVSGDNPKKTGGLFKNNDIE
IPLKDMRELEIFFHKLTFFTHILDYSATIVNLTDLGFLWFREFYLETSRVIQFPIECSLP
WMLVDQIIESQDAGLLESLLMPFDIYNDSAQHALHVLKQRFLYDEIEAEVDLCFDQLVFK
LSENIFAYYKSRAASKLLDPAFLFASDNADKYDVTPRRYDALFKMRRVKLLGRSIDLRYL
IGQRMNKIFRENIDILFERFESQDICAVVELQQLFDVLRLTYQLLKEYLTMDPFRVMLNE
MSENISLVSFSGRLASQIFAEMQNDFLLNFIFCNTTQRYIRSSKVCQRPIQRPPIPHAKS
SFYCGSSELNMAYQAFAQLYSKFFGLPHMHAIVKLLGSRSLPWLVRALLDLLAHKITSLV
PNVTELQESLPKSMGLLSFDGGVAGCLKVIQEQITWVSSYQRKGEVLHCLKEIGTMVSCM
SLLDTVLREVETTQFMQIAPWLGILPGKDGQAQQILAEDGNSPVISLFKSATNAVISLPD
CLSPSSFLTMCKQAEAADSFYASSIQTGSVLDYTLAFMSASLDTVRGKWDPSPKTGFIDI
TSSREFSRIYSGLQFMFCGEPIEESISNQQQFGDSVAWGGCTITYLLGQQLHFELFDFVY
QMLNIAESESVTTAYPTMLERSKQVHYGQDLDMFLENAKKARRLNNHVFSMLKARCPLED
KMACAIKQSGAPVLRMKYSNTLSAFETLPQKARFMDPLSKEHSKLSTP
NT seq
3927 nt
NT seq
+upstream
nt +downstream
nt
atggcagtccccctggaagatgccgtggcagctctctccacattctctttggaggatgat
caaccagatgtacaaggactatctgttattttatcaactggaagatgtgcaactcaaagt
ccaataggtggttatgaggatgttcccgcttatcgtttatctttgatggaggatacaaaa
tctattaatcagctgaatgtgctggttcaagagggaaaggagatggcagctgttctctac
acctatcgcagctgtgttaaagctcttcctcagctaccagactctttgaagcaaagtcaa
gcagatttgtactttgaaacttaccaagtcttagatttggaaatcagtcggcttcgtgaa
atccaacgatggcaagcatcagcggcatctaaactcgcagttgacatgcaacgtttttct
cggccagagagattaatcaatggacctacaataacccatatgtggtccatgcttaagctg
cttgatgttttgttggagcttgatcatttgaaaaatgcaaaagctagtatacctaatgat
ttctcttggtacaaaaggacattcacacaagttagtagccaatggcaagatacagattca
atgagggaggagttggatgatttgcagatatttctgagtacaagatgggctattctactg
aacatacaggtggaactctttcgagtgaataatattgaggacatacttcagatgcttatc
attttttgcatcgaatcattggagacagtctctgctctgttattctcagagcgtcatgct
cttctgagagtgctacctgttcttgtggttttagcaacatcatctgaaaaggaaggggac
acaatatttaaaaaaataaagataactcgcctcattaacatattcaagagggatcctgtt
attccagcttttccagatcttcatcttgcacctgctacaatgctgaaagaactctcttca
tatttccagagattctcaagccatagtcgtttaatttctcttcctgcaccacatgaaatt
gggccacgtgaagcattggagtatcagcgacactattctgtcctccatcatattggcatg
atccgctcagaacatgacgactttgcattgcgttttgcagctgcaaagaatcagctttta
cttctgaagtcttcacagggcattgatcttgaaaggaacagggaagtcaagtgcaatatg
tatggtatagttgttgaaggttttcaaatacttagcaggtggattggccatgtttgggag
caatgtgcatggaagttctccaggccttctaaggattctattcctcttgatccagatgat
cgttctgcaaatgtttcagattatgagaaggttgttcgatgcaattattcttatgaagag
agaagggcaatggttgagctcactagctatattaaaggaattggcgcaatgatgcagaaa
tctgatacagtgattgcagatgctttgtgggaagcaattcatgctgaggttcaggatttt
gtgcaaaataagctggcaattatgctgagaacaacgtttaaaaagaagaaggatctttca
cggattttatcagacatgaggacaatagcagcagattggatggcaaacacaatcaggcct
gaaactcatcaaaatgcttcaagacgaggaggtgatgacaacaatggggtatctttccag
ccaaggcctgtggcaccaacagctgctcaggtacattgcttgcaatttttgatacacgag
cttgtgtctggtgacaatccaaagaagactggaggcctatttaaaaacaatgatatagag
attcctttgaaagatatgagggaactagagatattctttcacaagctaacctttttcact
catatcttggactattccgccacaatagtgaacctaacagatctcggtttcctttggttt
agagaattttacttggaaacttctcgtgtgattcagtttcctatagagtgctctttgcca
tggatgttggtggaccagattatagaatctcaagatgcagggcttttagagagcctttta
atgccattcgatatatacaatgattctgcacaacatgcacttcatgtgctgaaacagcgg
tttctttatgatgaaattgaggctgaggtagatttatgctttgatcaactagttttcaaa
ctcagtgagaatatatttgcatactacaagagtcgtgctgccagcaagttacttgatcca
gcatttctatttgcctctgacaatgcagacaagtatgatgtcacacctagacggtatgat
gccttgtttaagatgcggcgtgttaagctgctaggcagaagtatcgatcttagatatttg
attggccaaaggatgaacaaaattttcagagaaaacattgatatcttgtttgaacgtttt
gaatcccaggatatatgcgctgttgtggagttgcagcagctgtttgacgtcttaaggctt
acttatcagctcctcaaagaatatttaacaatggaccctttccgtgtcatgttaaatgag
atgtctgagaatatttcccttgtctcattttctggtcgacttgcctcccagatttttgca
gagatgcaaaatgattttttgttgaatttcatcttctgcaataccacccaacgttatatt
cgatcatcaaaagtgtgccaaaggccaatacagcggccacctattcctcatgcaaaatct
agtttttactgtggatcatctgaattgaacatggcatatcaagcttttgcccaattgtat
agcaaattctttggcttacctcacatgcatgcaatagtcaaactgttaggttcaagatca
cttccttggcttgttcgggcacttcttgacctgcttgcacacaagattacatctcttgta
ccaaatgttactgaattacaagagtcattgccaaaatccatgggtctcctttcttttgat
ggaggagttgcaggttgtttgaaagttatacaagagcaaataacatgggtttctagttat
caaaggaaaggggaagtcctccattgtttgaaggaaattggcaccatggtttcatgcatg
agtctcctagatacagttttgagggaagttgaaacgacacagttcatgcaaatagcacca
tggttgggaatactacctggaaaggatggccaggcacaacagattcttgcagaagatgga
aatagtcccgttataagtcttttcaaatctgcgacaaatgcagtcatttctcttccagat
tgtttaagcccatcctcttttcttacaatgtgcaaacaagctgaagctgctgattcattt
tacgcaagcagtatacagacaggaagtgttttggactacactcttgctttcatgagtgca
tccttggatacagttcgtggcaaatgggatccatctccaaagacaggtttcatagacatt
acctcatcaagggagttctctcgcatatacagtggtcttcagtttatgttttgtggagag
ccaattgaagagtcaataagcaatcaacaacaatttggtgattcagtagcatggggaggc
tgtacaataacatacttgctcggtcaacaacttcactttgaattatttgattttgtatat
caaatgctaaatattgcagagtcagagagtgtaacaacagcttatccaactatgttagaa
cgatcaaaacaagtacactatggacaggatttggatatgtttctggaaaatgctaaaaag
gcaagaaggttaaataatcatgttttctcaatgttgaaagcacgttgcccccttgaagat
aaaatggcatgtgcaatcaaacaaagtggtgccccagtacttagaatgaaatactccaac
accttatctgcatttgaaacattgccacaaaaagctcgttttatggatccactgagcaaa
gagcatagcaagttatcaactccttga
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