KEGG   Cryptomeria japonica (Japanese cedar): 131074651
Entry
131074651         CDS       T10556                                 
Name
(RefSeq) UBP1-associated protein 2C
  KO
K12741  heterogeneous nuclear ribonucleoprotein A1/A3
Organism
cjf  Cryptomeria japonica (Japanese cedar)
Pathway
cjf03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:cjf00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    131074651
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:cjf03019]
    131074651
   03041 Spliceosome [BR:cjf03041]
    131074651
Messenger RNA biogenesis [BR:cjf03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    Other transport factors
     131074651
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     131074651
Spliceosome [BR:cjf03041]
 Common components
  Common spliceosomal components
   hnRNP proteins
    131074651
SSDB
Motif
Pfam: RRM_1 RRM_7 RRM_Nup35 Nup35_RRM_2 RRM_3 PHM7_cyt Cut8
Other DBs
NCBI-GeneID: 131074651
NCBI-ProteinID: XP_057867296
LinkDB
Position
4:complement(389168587..389186859)
AA seq 370 aa
MDAGKKRKLAHQGNGVSLDPDELHALLEPLSKEQLLSIMVNIGSSNPAIAEEIREVASKD
PAHRKLFVRGLAWETSSQTLCAAFEQYGEIEEGAVIMDKSTGKSRGFGFVTFKHMDSAQR
ALKEPSKTIDGRITITNLAAAANSSPGQTGDLTQRKLYIGGLSYDTATDKLLEVFSKYGE
IEEGSVAYDKNTNKSRGFAFVTFKTVEAAKRALKEPNKTIDGRGVNVKLAAEGQKEKPTP
QPAASLQAQPHPQIQTGYATEYPSMLSYHRPVPQAPASAPLSIGYSTYPPGLSAYAVQPT
PYATQPTYGGLSSASHYGGLGSAAPYSSSQYAKYATSLQTPRVVPSGLHASAGTGASGGY
PYYGSSGNSF
NT seq 1113 nt   +upstreamnt  +downstreamnt
atggatgcaggcaagaagagaaagctcgctcaccaaggcaacggcgtcagtctcgacccg
gatgaattgcacgcccttttggaacccttaagcaaagaacagttgctctctatcatggtc
aatataggttcctcaaaccctgcaattgcagaagaaattagagaggttgcaagcaaggac
cctgctcatcggaagctgtttgtgcgtggattggcttgggagacttcttctcagactcta
tgtgctgcttttgaacagtatggggaaattgaagaaggggctgtcattatggataagtca
actggaaagtcaagaggatttggttttgtcacattcaagcatatggattcggctcaaagg
gctttaaaggaacctagtaagacgattgatggtcggattactataaccaatttagcagca
gcagcaaattcaagtcctggtcaaactggtgatctcacacagaggaagctttatattggt
ggtctttcatatgacacagctactgataaactgctggaggttttttcaaagtatggagag
atagaggaaggttctgtcgcatatgataagaatacaaacaaatccaggggatttgcattt
gtgacttttaagacagtagaagctgcaaagcgggctctgaaggaaccaaacaaaaccatt
gatggtagaggggttaatgtaaaacttgcagctgagggtcagaaggagaaaccaacacca
caaccggcagcatctctgcaagcacagccacatccacaaatacagacaggttatgcaact
gagtatccaagtatgctgtcatatcataggccagtaccacaggcaccggcttctgcaccc
ctatcaattggttactcaacatatcctccaggtctatctgcatatgctgttcagccaact
ccatatgcaacacaacctacatatggagggctttcatctgcttctcattatggaggtcta
ggctcggcagcaccttacagctcaagccagtatgcaaaatatgcaacttccttgcaaact
ccgcgtgtggttccatctggattgcatgctagtgctggaacaggagccagtggaggctac
ccttactatggttcaagtggaaatagtttttag

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