Cryptomeria japonica (Japanese cedar): 131074932
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Entry
131074932 CDS
T10556
Name
(RefSeq) replication factor C subunit 2
KO
K10755
replication factor C subunit 2/4
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03410
Base excision repair
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131074932
03410 Base excision repair
131074932
03420 Nucleotide excision repair
131074932
03430 Mismatch repair
131074932
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
cjf03032
]
131074932
03036 Chromosome and associated proteins [BR:
cjf03036
]
131074932
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131074932
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
131074932
DNA Replication Termination Factors
ELG1-RFC complex
131074932
Chromosome and associated proteins [BR:
cjf03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
131074932
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
131074932
Check point factors
HRAD17(Rad24)-RFC complex
131074932
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
RCF1-5-like_lid
Rad17
AAA_lid_RFC1
AAA_22
AAA_16
RuvB_N
Mg_chelatase
SLFN-g3_helicase
AAA_11
AAA_5
AAA_assoc_2
AAA_18
ResIII
nSTAND3
AAA_14
nSTAND_NTPase5
PhoH
AAA_2
AAA_25
AAA_24
AAA_28
DNAX_ATPase_lid
AAA_30
RNA_helicase
AAA_7
NPHP3_N
Parvo_NS1
ATPase_2
TIP49
NB-ARC
Motif
Other DBs
NCBI-GeneID:
131074932
NCBI-ProteinID:
XP_057867654
LinkDB
All DBs
Position
5:complement(565857422..565975615)
Genome browser
AA seq
340 aa
AA seq
DB search
MAPVHTGSQQWVEKYRPRQVKDVAHQEEVVRALSNTLETGCLPHLLFYGPPGTGKTTTAL
AIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGSGSTNSGYLCPPFKIII
LDEADSMTEDAQNALRRTMETHSKVTRFCFICNYVSRIIEPLASRCAKFRFKPLVEDIMT
NRILHICNEEGLHLDSDALKTLGSVSEGDLRRAITCLQSAARLYGSSISSNNIISVSGMV
PNQVVQSLFQACKTGQFDVAQKEVADITAEGHPTSQIFSQLYDMVVQASDISDETKARIS
QRLAEADKCLIDGADEYLQLLDVTSNTMRALCNMTQECCF
NT seq
1023 nt
NT seq
+upstream
nt +downstream
nt
atggctccagtgcacactggttctcagcaatgggtggagaaatatcggccgaggcaggta
aaagatgttgctcaccaagaagaagttgtcagggcgctctccaatacacttgagactggc
tgcttacctcatttgctcttctatggtccaccgggtactgggaagacaacaacagctctt
gcaattgcacatcagctttttgggccagagctatataaatcaagagttttagagcttaat
gctagtgatgatcgtggtattaatgttgttcgcacaaaaattaaggactttgcagcagtg
gcagtaggttctggtagtaccaatagtggttatctttgtccaccctttaaaatcatcata
ctggatgaggcagattcaatgacagaagatgctcagaatgccttgcgacgtaccatggag
acacactctaaagttacaagattctgtttcatttgcaactatgttagcaggattattgag
ccacttgcttctagatgtgcaaagtttcgatttaaaccacttgttgaagatatcatgact
aatcgaatactacacatttgcaatgaggagggccttcaccttgattcagatgccttgaaa
actctggggtctgtttccgaaggtgatcttcgtcgagctataacttgcttgcagagtgct
gctcgattgtatggatcatctatttccagcaacaacatcattagtgtctcagggatggta
ccaaatcaggtggtccagtcactgtttcaagcatgtaaaaccgggcaatttgatgtagca
caaaaggaagttgcagacattacggctgaggggcatccaacatcccaaatcttttcccag
ttatatgacatggtagttcaagctagtgatatttcagatgagacaaaggcccgaataagc
cagagattagctgaagctgataagtgccttattgatggagctgatgaatacttgcagctg
ttggatgtaaccagcaatacaatgcgtgccttatgtaacatgactcaagaatgttgtttt
tga
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integrated database retrieval system
