Cryptomeria japonica (Japanese cedar): 131074976
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Entry
131074976 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131074976
03420 Nucleotide excision repair
131074976
03430 Mismatch repair
131074976
03440 Homologous recombination
131074976
03460 Fanconi anemia pathway
131074976
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131074976
03032 DNA replication proteins [BR:
cjf03032
]
131074976
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131074976
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131074976
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131074976
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131074976
MMR (mismatch excision repair)
131074976
DSBR (double strand breaks repair)
HR (homologous recombination)
131074976
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
CDC24_OB3
Fer4_9
Motif
Other DBs
NCBI-GeneID:
131074976
NCBI-ProteinID:
XP_057867716
LinkDB
All DBs
Position
6:complement(177375312..177376481)
Genome browser
AA seq
389 aa
AA seq
DB search
MADAHYGNIDIGATYKISSGVVKTANKIYNKLNSGIEITLVPESIVTPCEDDPSIPKNHF
SLMPINEILKQSNNSVIDDISVVICVEPSSTIRRRDGTEVIRHTIKLLNLSRTTIEVMIW
GAPSKKEGVQLQQKYYLQETTILAIKNGRVCEYNGKVLSTLSNTHLILNPTILEADKLRT
WFDQNVSDTHEPSVKYASLPPPTTRMTISDIRRQEEDMGQHHHCILKETTVRIKIESFCY
RACSNQINGNECKKRLIQNEELNWYCSKCETTLIECAYRYIVQIQLEDHTDTLWAIAFDE
GATQLLSMPAEMLYKLQFDPDVESDTEEVIKFVLNKQYIFKLTYKKEKYNEEERLKVTIT
RVEQVDFVAESNILLEQIKEMHDEMGAEE
NT seq
1170 nt
NT seq
+upstream
nt +downstream
nt
atggcagatgcacattatggtaatatagacattggagctacgtataagatttcaagtggg
gttgtgaaaactgctaataaaatttataacaaacttaatagtgggatagaaataactctt
gtgcctgaatcaatagtaaccccctgtgaagatgacccttccattccaaaaaaccatttc
tcattaatgcctattaatgaaatacttaagcaaagtaataattcagtcatcgatgatatt
agtgttgttatctgtgtagaaccaagctcaacaatcagaagaagagatggaacagaggtc
ataaggcataccataaagctactgaatttgtctcgaactacaatagaagttatgatatgg
ggagcaccatctaagaaagaaggtgtccaactacagcaaaaatattaccttcaagaaaca
acaatcctagcaatcaagaatggacgtgtttgtgaatataatggaaaggtattgagtaca
ttaagcaatacacacctaattctaaacccaacgatattagaagctgataaattgagaacc
tggtttgaccaaaatgtaagtgacacacatgaaccttcagtcaagtatgctagcttaccc
ccgccaactactagaatgacaatcagcgacatccgacgacaagaagaggacatgggacaa
catcatcattgcatactgaaggaaacaactgtacgcattaaaatagaatcattctgctat
cgagcatgctccaatcagataaatggaaatgagtgcaagaaacgattaattcaaaatgaa
gagttaaattggtattgttctaaatgtgagacgacactcatagaatgtgcttatagatat
atagttcaaatacaattagaagaccatacagatacattatgggctatagcatttgatgaa
ggagcgacacaactactaagtatgcctgctgaaatgttgtataagctacagttcgacccg
gatgtagaaagtgatactgaggaagtaataaagtttgtactaaataaacaatacatcttc
aaattgacgtacaagaaggaaaaatataatgaagaggaacgactgaaagtaacaattact
agggtagaacaagtagattttgttgcagaaagtaatatcttacttgaacagatcaaagaa
atgcatgatgaaatgggagcggaggaatag
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