Cryptomeria japonica (Japanese cedar): 131075544
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Entry
131075544 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131075544
03420 Nucleotide excision repair
131075544
03430 Mismatch repair
131075544
03440 Homologous recombination
131075544
03460 Fanconi anemia pathway
131075544
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131075544
03032 DNA replication proteins [BR:
cjf03032
]
131075544
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131075544
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131075544
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131075544
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131075544
MMR (mismatch excision repair)
131075544
DSBR (double strand breaks repair)
HR (homologous recombination)
131075544
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
CDC24_OB3
Ig_SMCHD1_7th
Motif
Other DBs
NCBI-GeneID:
131075544
NCBI-ProteinID:
XP_059076996
LinkDB
All DBs
Position
5:799199907..799201001
Genome browser
AA seq
364 aa
AA seq
DB search
MIDDEGTEIRITCFGDVAEMHYHRVKERTYYTVLKGCIIEVDTKWNKLNSDLEITLDNNS
ILKRCDVVVDGQGNNSRFTSINEITYCTNNALVDVIGIVVVVGEPSLIRRKDGGEVTKRI
VKINDVSTFTIDVNLWGATWQGLGEDLKNMHATQIVVVLAVRNAHVGYFNGKVINTRTTL
NINPSIPETETLMSRGKIPDDLLPLSCNAGQLNSQYNRMRITVVLERTSVLSEIVETTIR
VVVRIIKINSFCYPACPLKINDKECKKKCVQQNDNVWFYSRCQTHVPECNYKYLLQMKLQ
DYMSTLWDTAFDEVGTNVLQISAKDLYMLQYDLTTEKTPQTIIKGVLLSCFVFTLSVTTN
MYNS
NT seq
1095 nt
NT seq
+upstream
nt +downstream
nt
atgatagatgatgaaggtactgaaattagaataacttgctttggcgatgtagcagagatg
cattatcatagggttaaagaaagaacatattatactgtattgaaaggttgcattatagaa
gttgacacaaaatggaataagcttaacagtgatcttgagataactttggacaacaattca
atattgaagcgttgtgatgttgttgttgatggtcaaggaaataattctcgattcacatcg
atcaatgaaattacatactgcaccaacaatgctttagttgatgttattggtattgtagtt
gttgttggagaaccctcattaattcgtagaaaagatggaggtgaagtaacaaagagaatt
gtcaaaataaatgatgtctcaacttttactatcgatgttaacttatggggagcaacatgg
caagggctaggtgaagatttgaagaacatgcatgcaacccaaatagttgttgtccttgca
gtcagaaatgctcatgttggttatttcaatggaaaggtgatcaacacaagaacaactctg
aatataaacccttctatccctgaaacagagacacttatgtcaagaggaaagattccagat
gaccttttaccactgtcttgtaatgctggacaacttaactcacaatacaacagaatgaga
atcacagttgttttagaacgtacaagtgttctctctgaaatagttgaaactactattagg
gttgttgtgagaatcattaaaattaattctttttgctatccagcctgccctttgaaaatt
aatgacaaagagtgtaaaaagaaatgcgtccagcaaaatgataatgtctggttttattca
agatgtcaaactcatgtgccagaatgcaattacaaatacttattgcagatgaagctccaa
gattatatgagcactctttgggatactgcctttgatgaggttggcacaaatgtactgcaa
atatctgccaaggacctttacatgttgcagtatgatttgactacagagaaaacacctcag
actattatcaagggtgtccttttatcttgctttgttttcacactctctgttacaacaaac
atgtacaattcatag
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