KEGG   Cryptomeria japonica (Japanese cedar): 131075939
Entry
131075939         CDS       T10556                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
cjf  Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030  DNA replication
cjf03410  Base excision repair
cjf03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:cjf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    131075939
   03410 Base excision repair
    131075939
   03420 Nucleotide excision repair
    131075939
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:cjf03032]
    131075939
   03400 DNA repair and recombination proteins [BR:cjf03400]
    131075939
Enzymes [BR:cjf01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     131075939
DNA replication proteins [BR:cjf03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    131075939
DNA repair and recombination proteins [BR:cjf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      131075939
SSDB
Motif
Pfam: DUF1744 POL2_thumb DNA_pol_B_exo1 zf_DPOE_2 DNA_pol_B zf-DPOE DNA_pol_B_exo2 RNase_H_2 NCH1 DUF4695 zf-DNA_Pol
Other DBs
NCBI-GeneID: 131075939
NCBI-ProteinID: XP_057868898
LinkDB
Position
9:469989019..470051485
AA seq 2255 aa
MSAQGRGKKLSGGGVGYRSNAPEGGRGRGGGGRGRGGGGGGRASGKRPGLNKIKRGAEEE
LEAKLGFDLFTEGEPRLGWLLTMASSSFEDEDANKTFSCVDLYFVCQDGSTFKSKFKFAP
YFYVATKEKTELDVEAYLRRRYEGHISDIEVVDKEDLDLKNHLSGLYKTYLKISFDTVQE
LMHVKSDLLPVVERNQAKLEATDAYESFFVGKSDNKQKIQDFLDCIIDMREYDVPYHVRF
AIDNDARCGQWYTVKVDSAKVTLERRADLLQRAEVHVCAFDIETTKLPLKFPDAEYDMVM
MISYMVDGEGYLIINRECVGEDIEDLEYTPKPEFEGIFKVTNVPNERELIKRWFDHMHEV
KPGIYVTYNGDFFDWPFLEQRANHYGMRMSDELGFRCDKIQGECRAKFACHLDCFAWVKR
DSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAMEKPQTMASYSVSDAVATYYLYMTY
VHPFIFSLATIIPMPPDEVLRKGSGTLCEMLLMVQAFKANIICPNKHQSEPEKFYNGHLL
ESETYIGGHVECLESGVFRSDLPTKFRLEPSAYQQLIDNLDRDLQYAIKVEGKMDLDSVI
NYDDIKNDIILQLEALRDVPNREEHPLIYHLDVAAMYPNIILTNRLQPPSIVTDDVCAAC
DFNRPGKTCLRHLEWVWRGETYTAKRSEYYHLKNQIESEQVATGEGQLSHFFRDLPKEEQ
ETRLKDRLKKYCQKVYKRVLDKPVTERRVAGICMRENPFYADTVRSFRDRRYEYKGLNKV
WKGKFGEAKASGNPVKIQEAQDMVVVYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGV
VTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTSDPKKKLTISYPCV
MLNVDVARNNTNDQYQTLDNAIRRTYTTRSECSIEFEVDGPYKAMILPASKEEGVLIKKR
YAVFNDDGTLAELKGFEIKRRGELKLIKVFQAEVFDKFLHGTTLEECYSAVASVADRWLD
LLDNQGVDVSDGELLDFISESSTMSKSLLDYGEQKSCAVTTARRLADFLGDAMVKDKGLM
CRYIVARNPQGAPVSERAIPVAIFETEPEIMKVYVRKWCKTSSDVAIRSIVDWSYYRQRL
SSAIQKIITIPAAMQKVANPVPRVAHPDWLHKKVREKEDKFRQRNIRDMFGLKNKSLNDL
PVSNHFMDTELVGDLEDMANKENMPHLGPRPIVRNFESKKDLSRNKNCSQEPENSQKHRK
VLSDVNESDQRPESIDKNVDYQGWLDQKKRKWKETLEKRKKLRVDDSLRDTDNMIGVFDK
LPTSRGNRIERTRGGVGAFFRSREAALTHSHWQILQLLASQKPGEFFAWVLAGGNLFKIP
IKTPRVFYINTKAPITEEFPGKRVTRILPHGRTSFNLIEVVVDEEQFKAAGRKLAAHLAD
PEVEGVYETKMPLDFNTVLQLGCVCKVDISASNRNPRDGWNLSELHMKTTTECHYMQDQV
AFFYLYQSASEGRGLYALYTPASSTVSVVVVNPFQNRELSSGQLEKQFRDGLRHNGMSKG
DTCFDSFPSIFKVEYVGTAVDAGKLLQRILNDYRDQHRGPTLSVIECPCMELLSTTIPVI
TEFPCVKVPCNARDSQYQALGWQTMAARTGMQRCAASSQWLNERIALARYAHVPIGNFDL
DWLMFTADVFYSRALHDHQQVLWISDDGVPDLGGITEEEPSFADEVQQPVLIYPGAYRTV
SVELKIHHLAVNALLKSSQVNEMEGGSLLGFELDANGGGGQLGNESLGWDEATLCAPAFR
VLKQMVQGCVADAVSSGNVFADALLQHLYRWLCSPQSKLHDPALHRVLQKVMQKVFALLL
AEFRKLGATIIYADFSRIIVDTGKGDLVGAQGYCEYLLKTLQSRELFEWIEMEPQRFWHS
LLFMDQYNYGGIQAKLTAGASTDSVLENESQPDIVSSWNIAEYLPKAIQDYFVVIVSEFI
YLPWKHSQEQAALRTAARDGSFCTPSVTIAAAADVESEEVSFLKEQIASYFTDKLLRIVR
DTQRHITAKGRREDVTVDAISHEFPKLAGSYLPMGDGALEFIKHVSAVLALDHRVQHDVL
VMRKNLLKLVHVKEFSPEAEFRDPCLSFTLPNVICSYCNDCRDLDLCRDAALLEHDWRCS
VPQCGQPYNKDWIENALIQIIRQRERLYHVQDLVCSKCHQIKSSHLADQCSCAGSFHCTD
DPVGFLSKMQVFLNIAVFHQFSLLRECASWIVEAS
NT seq 6768 nt   +upstreamnt  +downstreamnt
atgagcgctcaaggcagaggcaaaaaattgtctggtggaggcgtggggtacagatccaat
gcacccgaaggtgggcgcggcagaggagggggtggacgaggcagaggaggaggcggaggg
ggcagagcttccggcaagagacctggtctgaataaaatcaagcgtggtgcagaggaggag
ctagaggccaagctagggttcgatctcttcactgaaggcgaaccccgcttaggatggctt
cttactatggcatcttcatcattcgaagatgaagatgccaacaaaacattcagctgtgtt
gatctctattttgtatgtcaggatggatctacattcaaatccaagtttaagtttgctcca
tacttctatgttgccacaaaggaaaaaacggagttggatgtggaagcatacttgcgtcgt
cgatatgagggtcacatttctgatatagaagtcgtggacaaagaagacctggatttgaaa
aatcatctgtcaggcttgtacaagacatatctcaaaatcagcttcgacactgttcaggaa
ctaatgcatgttaaaagtgatctcctgcctgttgttgaaaggaaccaagctaagcttgaa
gcaacagatgcttatgaatccttctttgttggcaagagtgacaataaacagaagatacaa
gactttttggattgcattattgacatgcgggagtatgatgttccctaccatgttcgcttt
gctattgataatgatgcaaggtgtggacagtggtatactgtcaaagtagactctgctaaa
gttactttagaaaggagggctgatcttcttcagcgtgctgaggtccatgtgtgtgctttt
gatatagagacaaccaagcttcctttgaaattccctgatgctgagtatgatatggtaatg
atgatttcatacatggtggatggtgaaggctaccttattatcaatcgcgagtgcgttggg
gaggacattgaagacttggagtacacaccaaagccagaattcgaagggattttcaaagtg
accaatgtaccaaatgagagagagcttattaagcggtggtttgatcatatgcatgaagtg
aagcctggaatttacgtgacatacaatggtgatttttttgattggcctttcctggagcaa
cgggctaatcattatggaatgagaatgagtgatgaacttggcttccgttgtgataaaatc
caaggtgaatgccgtgctaaatttgcatgccacttagattgttttgcttgggttaagcgt
gacagttatctgccacaaggtagccagggcctgaaggctgttacaaaagcaaagttaggt
tatgatccattggaagtaaatcctgaggatatggtccgctttgcaatggaaaagcctcag
acaatggcttcctattcagtatctgatgcagttgcaacatattacctttacatgacatat
gtacacccgtttatcttttctttagcaacaataatccctatgccccctgatgaagtttta
cgcaagggcagtggaactctttgtgaaatgttgcttatggtccaggcattcaaggcaaat
atcatttgtcccaacaaacatcaatccgaaccggaaaagttttacaatgggcatctactt
gagagtgaaacgtatattggaggccatgttgaatgtctagaaagtggtgtcttccgttct
gatcttcctacgaaatttcgtcttgaaccttcagcttatcagcaattaattgacaatcta
gatcgagatcttcaatatgccataaaagtggaggggaagatggatttggattctgtcatc
aattatgatgatattaaaaatgatataatcctgcagttggaagcactgcgggatgttcca
aatcgagaagagcatcctcttatatatcatctagatgtggcagcaatgtatcctaatatt
attctcacaaatcgacttcagcccccttcaatagttacagatgatgtatgtgctgcatgt
gatttcaatcgtcctggtaaaacatgccttcgacatcttgagtgggtttggcgaggagaa
acttatacagcaaaaagaagtgaatactatcatttaaaaaatcaaatagagtccgagcag
gttgccactggagaaggtcagttatctcattttttccgtgatctccctaaagaagagcaa
gagacacgacttaaagatcgtcttaagaagtactgccaaaaggtttataaacgggtttta
gataagcctgttactgaacgacgggttgctgggatatgcatgcgagagaatcctttctat
gcagacactgtgcgcagcttccgagatagaagatacgagtataaaggtctcaataaggtc
tggaaggggaaatttggagaagccaaggcttctggaaacccagtaaagattcaagaagca
caggatatggtagtggtctatgattctcttcaattggcacacaagtgtattcttaattcc
ttttacggctatgtcatgcgcaagggggctagatggtattcaatggagatggctggagtt
gtcacatacactggagctaagataattcaaaatgcccgattgctggtggagaaaattggg
aaaccattagagctggatacagatggtatttggtgtgcattgccagggtcttttcctgag
aactttaccttcaaaacatcggatcccaagaagaagctcacaatatcatatccatgtgtt
atgcttaatgttgatgttgctaggaacaacactaatgaccaataccagaccttggacaat
gctatccggcggacatacacaacaagaagtgaatgttccattgagtttgaagtagatgga
ccatataaggcaatgattctaccagcttctaaggaagaaggtgttctaatcaagaagcgc
tatgctgtttttaatgatgatggcaccctagcagaacttaaaggttttgaaataaagcgt
cgaggtgaactgaagcttattaaagtcttccaggctgaagtgtttgataaatttcttcat
ggaacaaccttagaggaatgctattcagcagttgcttctgtggcagaccggtggcttgac
cttcttgataaccaaggagttgatgtttctgatggtgaattgctggattttatatctgaa
tcaagtaccatgagcaaatcactgttggactacggggagcagaagtcatgtgctgttact
actgcaagaaggcttgctgattttcttggagatgcaatggttaaagataaagggcttatg
tgccgatacatagttgcacgaaatccacagggtgctcctgtgagtgagcgtgctatacct
gttgcaatttttgaaacagaacctgaaataatgaaagtatacgtaaggaaatggtgcaaa
acatcatctgatgtagctattaggtctattgtggactggtcatattaccggcaacgccta
agctctgcaatccagaaaattattacaattcctgctgccatgcaaaaggttgctaatcct
gtgccaagggtagcacatccagattggctacataagaaggtccgcgaaaaggaagacaaa
tttcgccaacgaaatattcgagatatgtttggcttaaagaacaagtcacttaacgatttg
cctgtatccaatcattttatggataccgagttggttggagatttagaggatatggctaac
aaagagaatatgcctcatttgggtcctaggcctatagttcgtaactttgaaagcaagaaa
gatttatccaggaataaaaattgcagtcaagagccagaaaacagtcagaagcatcgtaaa
gtgttgtctgatgtaaatgaaagtgatcagaggcctgaatccattgataagaatgttgat
taccaaggttggcttgaccagaagaagcggaaatggaaagaaacacttgagaagcgaaaa
aagctaagggtggatgattctctaagagacacagataatatgataggggtgtttgacaaa
cttcctacttcgagaggtaatagaatagaaaggacaagagggggagttggtgcattcttt
agaagccgcgaagcagcacttactcactctcattggcagattttgcagcttcttgcaagt
caaaagcctggggagttctttgcatgggtcttggcaggaggaaatttgtttaaaattcct
attaaaactcctcgagtgttctatatcaacaccaaagcacctattacagaagaatttcct
ggaaagcgtgttacgcggattctgcctcatggacggacaagcttcaacttgattgaggtg
gtagttgatgaagaacaattcaaagctgcaggaagaaagcttgctgctcatctggcagat
cctgaggtggagggagtgtatgagactaagatgcccttagattttaatacagttctccaa
cttggctgtgtttgcaaagtggatattagtgctagcaatcgaaatccaagagatggttgg
aatttgagtgaattacacatgaagactaccacagaatgtcattatatgcaggatcaagtt
gctttcttttacctatatcaaagtgcatctgaaggaagaggcctatatgctctatacact
cctgcttcaagcacggtgtctgtagtggttgtgaaccctttccagaatagggagctctcc
tctggacagcttgaaaagcaattccgtgatggtttgcgtcacaatggaatgtcaaaagga
gatacctgttttgattcctttcctagtatcttcaaggtggagtatgtagggactgctgta
gatgcgggaaagctactacagagaatattaaatgactacagggatcaacatcgtggtcca
acacttagtgtcattgaatgcccctgtatggaattattgagtacaactattcctgttata
actgaattcccatgtgtgaaagttccttgcaatgctcgagatagccaataccaggccctt
ggatggcagacaatggcagctaggacggggatgcaacgctgtgcagcatcatcccagtgg
ttgaatgaaagaattgctcttgctcgatatgctcatgtacccataggaaactttgatctt
gattggctaatgtttactgctgatgtcttttattcccgggctttacatgatcatcagcag
gtgctttggatatctgatgatggagttccagacctgggaggtattacagaagaagaacca
agctttgcagatgaagtgcaacagcctgttcttatttatccaggagcatataggacagtc
tcagtggaattgaagatacatcatcttgcagtgaatgctctattgaagagcagccaagtg
aatgaaatggaaggaggatcattgttgggctttgagctagatgcaaatggaggtgggggg
caacttggtaatgagtcactgggttgggatgaagcaactttatgtgcacctgcttttcgt
gttttgaagcaaatggttcaaggatgtgtagccgatgcagtttcctctggaaatgtgttt
gcagatgctttgttgcagcatctgtaccgctggctttgcagtccacagtcaaagctacat
gatccagctcttcatcgagttctgcaaaaggttatgcagaaagtgtttgctctactgcta
gcagaattccgtaaactaggggcaacaattatttatgcagatttctccagaatcattgtt
gatactgggaaaggagatttagttggagctcaaggttattgtgaatacttgctgaaaaca
cttcaaagcagagaactttttgaatggattgaaatggagcctcagcgtttttggcactca
cttttgttcatggaccagtacaattatggaggaattcaagcaaagctcacagcaggagca
tcaactgattcagtcttagaaaatgagagtcagccagacatagtatcaagctggaacatt
gccgagtatctgcccaaagctatccaggattattttgttgtcatagtttctgagtttata
taccttccatggaagcattcacaagaacaggctgcattgcgaactgctgcaagggatggc
agtttctgcacaccatctgttacaattgcagctgcagctgatgttgaatcagaggaagtg
tcattcctcaaggaacagatcgcttcatacttcacggacaagcttctcagaattgtccgt
gacacacagcgtcacattactgctaaaggaagaagagaagatgttactgtagatgctatt
tcccacgaattcccaaaactggcaggatcttacctaccaatgggtgatggtgccttggaa
ttcatcaagcatgtttctgctgttcttgctcttgatcaccgtgttcaacatgatgttttg
gtgatgcggaagaatcttctcaagttggtccatgtaaaagagttttctccagaggcagaa
tttcgagatccttgtttgtccttcacgcttcctaatgttatttgcagttattgtaatgac
tgcagggatttggatctgtgtcgtgatgctgcattgctggagcatgattggcgatgttct
gtaccacagtgtggtcagccttacaacaaagactggattgaaaatgcacttatccaaatt
attcggcagagggagcgcctatatcatgtacaggatcttgtatgctcaaagtgccatcaa
ataaagtcatcccatcttgctgaccaatgcagttgtgcaggttctttccattgtacagat
gatccagttggatttctttctaaaatgcaggtcttcctgaacattgcagtgttccaccaa
ttttctcttcttagagaatgtgcttcatggatcgtggaagcaagctag

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