Cryptomeria japonica (Japanese cedar): 131076233
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Entry
131076233 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131076233
03420 Nucleotide excision repair
131076233
03430 Mismatch repair
131076233
03440 Homologous recombination
131076233
03460 Fanconi anemia pathway
131076233
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131076233
03032 DNA replication proteins [BR:
cjf03032
]
131076233
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131076233
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131076233
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131076233
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131076233
MMR (mismatch excision repair)
131076233
DSBR (double strand breaks repair)
HR (homologous recombination)
131076233
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
131076233
NCBI-ProteinID:
XP_059071497
LinkDB
All DBs
Position
Unknown
AA seq
514 aa
AA seq
DB search
MALFMLFNYLWLWLLPVWKAFSRLLCEFHAVHALNLQVWKAFSRLLCEFHAVHALNLQVC
KGFSMLLFEFHAVNGLNLQGLLLCLCYLTVGGRDCFQFARHFRITLHIVVELGFVVALSE
WFEFASCKTVLLGLFLRFSPLTVLGCQGSIKEENARYKKLNNHLEITLSNASILKCYTNE
EQADQQGPPFTPINELFHLKNNTLVDIIGLVLYVGDIIPIHRIDGSQTQKHVVKINDLFD
STIDINLWGPMAEQKGLELKNMLTNDSVVILALRNACAGYFNGKLINITAATTLHINPTF
PEAELLILRGKDPLVAVPFVAKTIHIDGKYTRMTISSIRDQMSIKPETIQTPLLAGLRFV
NVTDQNFYYASCPLIVNGRPCKKKCTQQVDDSWFFSRCQMTMQDYNYSYLLPLKLQDATS
TLWATAFDEGSIHLLHKTAKQLCALQNDATTIETPSSVFKRLLSHHYSFTLLVSTETYNS
ESKMKVIVNKVAPLDFKAECHALLAEIGHLSTRT
NT seq
1545 nt
NT seq
+upstream
nt +downstream
nt
atggctttgtttatgttgtttaactatttgtggctgtggctacttccagtttggaaggca
ttttcgaggttgctttgtgagtttcacgctgtgcatgctttgaatttgcaagtttggaag
gcattttcgaggctactttgtgagtttcatgccgtgcatgctttgaatttgcaagtttgc
aagggattttcgatgttgctttttgagtttcatgccgtgaatggtttgaatttgcaaggg
ttgttgctttgtctatgttatttaactgttggtgggcgtgactgcttccagtttgcaagg
cattttcgcataactttgcatatagttgtcgagttaggttttgttgtggctctgagtgaa
tggtttgaatttgcaagttgcaagactgttttgttgggcttgtttctgaggttctcaccg
ttaacggttttaggttgccagggatctattaaggaggaaaatgcaaggtataaaaaacta
aacaatcatttagaaatcaccttgtctaatgcatcaatactgaaatgctacaccaatgaa
gaacaagcagatcaacaaggtcctcctttcacgcccattaatgaattgtttcatctaaaa
aataacacattggttgacataattggccttgttctatatgttggagatatcattccaata
cacaggatagatggcagtcaaacacagaaacatgttgtgaaaattaatgatctatttgat
tcaacaattgacatcaacctatggggtccaatggcagaacaaaaaggcctagaattgaaa
aatatgttgaccaatgatagtgtggttatccttgctttgcgtaatgcttgtgctggctat
ttcaatgggaagcttataaacataacagctgcaaccacattacatatcaacccaactttt
ccagaagcagagcttctaatattaagaggaaaggaccctttggttgctgtaccatttgtt
gcaaaaactatccacatagatggaaaatatactagaatgactatttcttcaatccgtgat
cagatgagcatcaaaccagaaacaattcagacacctttgctagctggtctacgctttgta
aatgtaactgaccaaaatttctattacgcatcctgtccactaatagtcaatggacggcct
tgcaagaaaaaatgtacacagcaagttgatgattcttggttcttctctagatgtcaaatg
actatgcaagactataattatagttacctcttgccactaaagttacaagatgccacaagt
actctatgggccactgcatttgatgagggtagcattcacttgctacacaaaactgcaaaa
caactttgtgcactacaaaatgatgcaacaacaatagagacaccttcctcggtgtttaag
agactactgtcacatcactattcattcacactgttggtttccactgagacatataattca
gaatcaaagatgaaagtgatagtcaataaagtcgctcctcttgatttcaaagctgagtgt
catgcactacttgcagaaattggccacctaagtacacggacttag
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integrated database retrieval system
