Cryptomeria japonica (Japanese cedar): 131076624
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Entry
131076624 CDS
T10556
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03040
Spliceosome
Brite
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
131076624
Spliceosome [BR:
cjf03041
]
Complex C
Other components
Step II factors
131076624
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GFIT
Other DBs
NCBI-GeneID:
131076624
NCBI-ProteinID:
XP_057869889
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Position
5:128608467..128710641
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AA seq
1335 aa
AA seq
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MLASNMLEAEEESKGGLQIPGKDRVIFRAPSTGKSILGLDTLARAKRAAVENGSSLHKTT
TLSTMEEGEREENLVIDGNEESSEALDHRKDSKVMRRYREPRLEDTPYVGGINAADSERL
YDKGSAEDSSLSSRSPYRGGDQSRAFSRDRNNDRDGGQDRYNTERRRSYSDVKNDRISES
DRHRGERRESSRHLRDRRDSSRDRQSSESSRESSRSTGDEWDKRREKWGHDSREPLRDAR
EGWSSDRDRHRRNEYERHGAKRHRNDYSPRRSGRSDWDDGRWEWDDTPRRDKTPVHEPHL
PMPSPMLVGASPDLRLVSPWLGGDTPCAPGSAESPWDYISPSPVPIRAGGSSMKITNSRS
GVRSHQLSFNSRSTESQNEEDAIEDKASFGKEDTNAVSKQMVEEMEEAERDADRAWYDRE
EGGTMLEGDSSSLFFGDDAAFEKRKNEMAKRLTRKDGTKMSLAQSKKMSQLTADNAQWED
RQLMRSGAVRGTEVQTEFEDEEDSRVILLVHDTKPPFLDGRVVFTKQAEPIMPIKDPTSD
MAIISRKGSALVREIREKQSMNKSRQRFWELAGSKLGNILGVEKTAEQVDADQATVGSEG
EVDFKQDAKFASHLKEKGEAVSEFAKSKTLSEQRHYLPIFSVRDDVLQVIRENQVIVVVG
ETGSGKTTQLTQYLHEDGYTTYGMIGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRF
EDVTGPNTLIKYMTDGVLLRETLREPDLDQYSIIVMDEAHERSLNTDVLFGILKQVVARR
RDFKLIVTSATLNAQKFSNFFGSVPIFNIPGRTFPVTVLYSKSPCEDYVEGAVKQAMSIH
ITCPPGDILIFMTGQDEIEATCYELAERMDQLESTTKNKITPLSILPIYSQLPSDLQAKI
FQKAENGARKCIVATNIAETSLTVDGILYVIDSGYGKLKVYNPRMGMDALQVFPASRAAA
DQRAGRAGRTGPGTCYRLYTETAYQNEMLPNPVPEIQRTNLGNVVLLLKSLNIENLLDFD
FMDPPPQDNILNSMYQLWVLGALDNVGRLTVLGRKMVEFPLDPSLAKMLLMGDELGCVNE
VLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKSNQYRGDWCND
HFLHVKGLRKAREVRSQLLDILKMQKIALTSCGPDWDVIRKAICSAYFHNAARLKGVGEY
VNCRTGMPCHLHPSSALYGLGYTPDYTVYHELVLTTKEYMQCVTAVEPQWLAELGPMFFS
VKDSDTSMLEHRKKQREEKTAMEKEMEELRKKQSELENEWKEKEKEKRAKESQQIAMPGS
RQRGTYLRPPKRLGL
NT seq
4008 nt
NT seq
+upstream
nt +downstream
nt
atgttagcttcaaatatgttggaagctgaggaagaaagtaaagggggtcttcaaatccct
gggaaagatagagttatatttagagcaccttccaccggaaaatctattttgggtttggat
actctggcccgggcaaagagggcagcagtcgagaatgggtcaagcttgcataaaacaact
actctttcaactatggaagagggtgaaagagaggaaaacctggtcattgatggcaatgaa
gaatcttctgaagctcttgatcatagaaaagatagcaaggtgatgcgtagatatcgagag
cctcgtctagaagataccccatatgttggtggaataaatgctgctgactcagaacgattg
tatgataaaggatcagctgaagattcaagcctatctagtagaagtccttacagaggagga
gatcaaagtagagcatttagtagagacagaaataatgatcgggatggtggtcaagacaga
tacaacactgaaagaaggagatcttatagcgatgtgaagaatgatagaattagtgagagt
gatagacatagaggagaaaggagggaatctagcagacatttaagagatagaagggacagt
agcagagataggcaaagcagtgaaagtagtagagaatctagcagaagtacaggggatgag
tgggacaagagacgagagaaatggggtcatgattctagggaacctttgagagatgctaga
gaagggtggtcaagtgatagagatagacaccgccggaatgaatatgaaaggcatggtgca
aaacgacatagaaatgattactctccaaggagatcaggtaggtccgactgggatgatggc
agatgggaatgggatgatacaccacgtcgagataaaacacctgttcatgagcctcatctt
ccaatgccttctccaatgctggttggtgcatcacctgatttacgcttagtgtcaccatgg
ctaggaggagatacgccctgtgctccagggtctgcagagtctccttgggactatatctca
ccatctcctgtaccaatacgtgctggcggatcttcaatgaaaataaccaactctcgttca
ggggtcaggtctcatcagttgagttttaattctagaagcacagaatctcagaatgaggag
gatgcaattgaagataaagcatcttttggcaaagaagatacaaatgctgttagtaaacag
atggtggaagaaatggaggaagcagaacgtgatgctgaccgagcatggtatgacagggaa
gaagggggaacaatgctagaaggtgacagttcatcattgtttttcggagatgatgcagca
tttgagaaacggaagaatgaaatggcaaagcgattgactaggaaagatggaacaaagatg
agccttgcacaaagcaaaaagatgtcacagcttactgcagacaatgcacagtgggaagat
cggcaactgatgagatctggagctgttcgaggaacagaagtgcaaacagaatttgaagat
gaagaggatagcagggttattcttcttgtacatgatacaaagcctccatttctggatggt
cgtgttgtcttcacaaaacaggcagagcctatcatgcccataaaggatccaacatcagat
atggctataatttctagaaaaggttctgcactagtgagagaaattcgtgaaaaacaaagc
atgaacaaatctcgacaacggttttgggagcttgcagggtctaaactaggaaatattctt
ggggttgagaaaacagctgaacaggtagatgcagatcaagcaacagttggttcagaagga
gaggttgattttaaacaggatgcaaaatttgcatcacacttgaaagaaaaaggggaagca
gtcagtgagtttgccaaatcaaagacattaagtgaacagcggcattatctcccaatattt
tctgtccgagatgatgttttgcaggttatccgtgaaaatcaagtaattgtggtggtagga
gagacaggatcagggaagaccacacagcttacacagtatttgcatgaggatggatacaca
acatatggaatgataggatgcactcaaccaaggcgtgttgcagctatgagtgttgcaaag
cgtgttagtgaagagatggaaactgaattgggagataaagttggttatgctattcgcttt
gaggatgttactggaccaaatactttaattaagtatatgactgatggagtgctgctacgg
gaaactctacgtgaacctgaccttgatcaatatagtataattgtcatggacgaagcgcat
gaaaggtctcttaatacagatgtgttatttggcatattgaaacaagtggttgcacggcgc
cgtgattttaagctcattgtaacatcagcaactcttaatgcacagaagttttccaatttt
tttggaagtgtacctattttcaatataccgggacggacatttcctgtgactgtactctac
agcaaatcaccttgtgaagactatgtggaaggagctgtgaaacaagcaatgtccattcat
attacctgtcctcctggagatattctcatatttatgacaggtcaggatgaaattgaagct
acttgttatgaattggcagaacgaatggatcagttagagtcaactacaaaaaacaaaata
accccgttatcaatacttccaatttattctcaactaccttcagatcttcaggctaaaata
tttcaaaaagcagaaaatggtgctcgcaagtgtattgttgccacaaatattgctgagaca
tcacttactgttgatggcatcttgtatgtcattgattctgggtatggcaagttgaaagtc
tacaatccaaggatgggtatggatgctcttcaggttttccctgcaagcagagctgcagca
gatcaacgtgctggtagagctggcaggacaggtcctgggacatgctatcgtttgtacact
gagacagcataccagaatgaaatgcttccaaatccagttcctgaaattcaacggaccaat
ctgggaaatgttgttttactattgaagtcattgaacattgagaaccttttggattttgat
ttcatggatcccccaccacaggataacattctcaactcaatgtatcagctttgggtactc
ggtgctcttgataatgtgggcagattgactgttcttggaaggaagatggttgaatttcca
cttgacccttctttagcaaaaatgctattaatgggagatgaacttggctgtgtcaatgaa
gtcctgactattgtttctatgctctctgttccatctgttttcttccgccctaaagatagg
gcagaagaaagtgatgcagcaagagaaaagttttttgttccagagagtgatcacctgaca
cttctgaatgtttatcaacaatggaaatctaatcagtatcggggtgattggtgcaatgat
cactttttgcatgtaaagggattgcgtaaagctcgtgaagtgcgatctcagcttttggat
atcctgaaaatgcaaaaaatagcactgacaagttgtggacctgattgggatgttattcgg
aaagcgatttgttcagcatactttcataatgcagctcgattaaaaggtgttggcgaatat
gtcaactgcaggactggaatgccatgccatttgcatcctagcagtgcactatatggtttg
gggtacactcctgattatacagtctatcatgaacttgttctcacaacaaaggaatacatg
cagtgtgtaacagctgttgagcctcaatggcttgctgaattaggtcctatgttcttctct
gtcaaggattcagatacctcaatgttggaacaccggaaaaagcaaagggaagagaaaact
gcaatggagaaggaaatggaagaactgaggaaaaagcagagtgagttagagaatgaatgg
aaagagaaggagaaagaaaaacgtgctaaagaaagccagcaaatagctatgcctggttct
cggcaacgtggaacttatctgcgtccacctaaaaggttgggcctttaa
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