Cryptomeria japonica (Japanese cedar): 131076720
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Entry
131076720 CDS
T10556
Name
(RefSeq) regulator of nonsense transcripts UPF3 isoform X1
KO
K14328
regulator of nonsense transcripts 3
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03013
Nucleocytoplasmic transport
cjf03015
mRNA surveillance pathway
Brite
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
131076720
mRNA cycle factors
P-body specific factors
131076720
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
131076720
NCBI-ProteinID:
XP_057870011
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Position
10:17294804..17335636
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AA seq
667 aa
AA seq
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MKDQGSATKLVLRRLPPALSEAALRAQIESRFSGRYNWLVFRPAHTSLIHSHSQRHQLFS
RAYIQMKTPIDVFEFADVFNGHVFVDEKGTQCTSKVEYAPYQGVPDTSKKDPREGTIDKD
PKYLEFLEMIAKPVENLPSAEIQLDRKEAERPGAQKDDMVVTPLMEYVRQKRAAKSGLRL
SSSGRKSGGRPRGAASTGLINKRGIERGKMNNVAYVMRDSTRGSSNKEKPTCILVQQRDQ
QQCCINEISIEKSRKDVDGKDRHNCSEGIETREEEGSNSVKSMQEPTDEMASVGDCSGES
GKRRLLLSKDREKEFANGPSGGLSVPNSMDVGVQVHKRQTSNFKGSSAQQTGGPSNLQGV
MSPVKGASGSMNFKHNHRWESNGRVGRGTLSSQDVHISVMSTNLEQQNQVLPNAEKDKRP
PRHPGLRSSLKDHSFASSSVDVDVKNFQDEKNMYATSKELYSPICMAEKQDRRTRNKDRP
DRPVWTPRRRSDGPPGSDAAQHLQAVPEGALKIEKTDKGLSRQKVALVEKVTEDTFLQVD
NSSDSFVAVPGKSSYVDLGGPQSSRRANTHLGVVASLDINQVDPKIENILSSGGGDIEGQ
NISRTAVLTGENGNHRQILRRPSASVTREADGASALEMKQNKRGAAVGYGGQEKQVWVAV
QKSGSCS
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgaaggatcagggcagtgccaccaaattggtgcttcggcgactgcctccagcgctctcg
gaggcggcgctgagggcgcagatcgagtcgcgcttcagcggccgctacaattggctcgtc
tttcgccccgcccataccagtctcatccatagtcacagccagcggcatcagctcttttcc
agggcatacatccaaatgaagacaccaatagatgtttttgaatttgccgatgtgtttaac
ggccatgtctttgttgatgaaaaaggcactcaatgtacatccaaagttgaatatgcacca
tatcaaggtgtccctgatacatccaagaaagatccacgtgaaggcaccattgacaaagat
cccaagtacttggagtttcttgagatgatagccaaaccggttgaaaatcttccaagtgca
gaaatacaattagacagaaaagaagctgaaaggccaggtgctcaaaaggatgatatggtt
gtcactcctttgatggagtatgttcggcagaagcgggctgcaaaaagtggactgagatta
tcgagttcaggcagaaagtcagggggacggcccagaggagcggcttcaactggtttgatt
aataagaggggtattgagagaggcaaaatgaataatgttgcgtatgtcatgagagatagc
acaaggggttcaagcaacaaggagaaaccaacatgcattttagttcaacagagggatcaa
caacagtgctgcatcaatgagatatcaattgagaagagtaggaaagatgttgatggaaaa
gatcgtcataattgctctgagggcattgaaacacgtgaagaggagggcagtaattcagtt
aaaagcatgcaagaacccacagatgaaatggcatctgttggggattgtagtggggaatct
ggaaagagacgattgctgctatcaaaagacagagaaaaagaatttgcaaatgggccttct
gggggtttatctgtgccaaatagcatggatgttggggttcaagttcataagcggcagaca
tccaatttcaaaggttcttctgcacagcagactggtggaccatcaaatctgcaaggtgtg
atgtctcctgtgaaaggagcttctggttccatgaatttcaagcacaatcatcgttgggaa
tctaatggaagggtaggcaggggtacactttcaagccaagatgttcacatatctgtcatg
tccacaaacttggagcagcaaaatcaagtgctgcctaatgctgaaaaggataagcgacca
ccaagacatcctggccttcgatctagtttgaaagatcacagttttgctagttcttctgtt
gatgtagatgttaagaatttccaagatgagaaaaatatgtatgcaacctcaaaggagttg
tacagtccaatttgcatggcagaaaaacaggatagacgcacaagaaataaggacaggcct
gaccgtcctgtttggactcctcgtcgtcgttctgatggcccacctggttctgatgcagct
caacacttacaagctgttcccgaaggtgctttgaaaatagaaaaaactgataagggtttg
tcccgacaaaaggttgcattggtagaaaaagtaacggaggatacttttttgcaagtagat
aattcaagtgacagttttgtggctgtaccagggaaatcatcatatgttgacttaggaggt
cctcaatcatctcgccgtgctaatactcatttgggagttgtagcctcgttggatattaat
caggtagatccaaaaattgaaaatatcttgtcaagtggaggtggagatattgaaggtcaa
aacatcagccgtactgctgttctaactggggaaaatggaaaccacaggcaaattttgagg
aggccatcagcgtctgtaacaagggaggcagatggagcatctgcattagaaatgaaacaa
aacaaacggggtgctgctgtaggctatggaggtcaagagaagcaagtgtgggttgctgta
cagaagtcaggctcttgttcataa
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