Cryptomeria japonica (Japanese cedar): 131077916
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Entry
131077916 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131077916
03420 Nucleotide excision repair
131077916
03430 Mismatch repair
131077916
03440 Homologous recombination
131077916
03460 Fanconi anemia pathway
131077916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131077916
03032 DNA replication proteins [BR:
cjf03032
]
131077916
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131077916
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131077916
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131077916
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131077916
MMR (mismatch excision repair)
131077916
DSBR (double strand breaks repair)
HR (homologous recombination)
131077916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
REPA_OB_2
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
POT1
SOGP_4th
Motif
Other DBs
NCBI-GeneID:
131077916
NCBI-ProteinID:
XP_059076460
LinkDB
All DBs
Position
5:191299581..191300920
Genome browser
AA seq
412 aa
AA seq
DB search
MDPQIQLTPHAILSINAGDDVPSPILQLLSFKKLIDNEDDNARYRLVLSDGTHMQLSILP
PKYSELLLSDTLKIGYVLSLIAYACRTVWNSRVIITFKLAVKFTNSPLLGKPRYLLKEKE
QEMFTRDPAPAARRSLKLEIHVPPAQQETFHNISTIKALIPFQNKWAIKGRVINKRKMHQ
YNTPKSSGQVFNFDMIDVEGTEIRITCFGDIVEMHYHRVEPGSYYYLSKGSIKEANTKWN
KVNIHLEITLDHNSILKHCDPPVDGEGSASRFTPINELTNCSNITLVDVIGVVVDVKDPA
VISRKDGTKVKKRVVKINDMSTFTVDVNLWGVAWEQLGEDLKNMHVAQTVVILEVTNARV
GYFNGKVINTTTTTTLKINPSTPEVDALISRGNIPADLLPLSCCWSTKLPIQ
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atggacccacaaatacaactaaccccacatgcaatcctctccattaatgccggcgatgac
gtcccatctccaatacttcaacttttgtctttcaaaaaattgatagacaatgaagatgac
aatgctcggtataggctcgttttatctgatggtacgcacatgcaattgtcaatcctgcca
ccaaagtatagtgaactgctgctttcagacacattaaagataggttatgtgctatcattg
atagcttatgcttgtagaactgtttggaactcgagggttataataacattcaagcttgct
gtcaaatttacaaattcaccattactcggaaaacctagatacctgcttaaagagaaagaa
caagaaatgttcactcgcgatccagctcctgcagctagacgttcccttaagcttgagata
cacgtcccacctgcacaacaagaaacctttcataatatcagcacgataaaagctttgatt
cccttccaaaataaatgggcaataaaaggtcgtgtaataaacaagaggaaaatgcatcag
tataatacaccaaaatcctctgggcaagtgtttaactttgacatgatagatgttgaaggt
actgaaattagaataacgtgttttggtgatatagttgagatgcattatcatagggttgaa
ccaggatcatattattatctgtcgaaaggttccattaaggaagccaacacaaaatggaat
aaagttaacattcatcttgagattactttggaccacaattcaatattaaagcattgtgat
ccgcctgttgatggtgaaggtagtgcttctcgattcacaccaatcaatgaacttacaaac
tgcagcaacatcactttagtcgatgtcattggtgttgtcgttgatgttaaagatcctgca
gtaatatctagaaaagatggaaccaaagtgaaaaaaagggttgttaaaataaatgatatg
tcgacttttactgttgatgttaatttatggggggtagcttgggaacaattaggtgaagat
ctcaagaatatgcatgtagctcaaacagttgtcatccttgaggtcactaatgcacgtgtt
ggctatttcaatggaaaggtgatcaacacaaccacaacaaccactctgaaaataaatcct
tctacaccagaggtagatgcacttatctcaagaggaaacattccagctgaccttttgcca
ctctcgtgttgctggtcaactaaattgccaatacagtag
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