Cryptomeria japonica (Japanese cedar): 131077991
Help
Entry
131077991 CDS
T10556
Name
(RefSeq) uncharacterized protein LOC131077991
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
131077991
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131077991
03041 Spliceosome [BR:
cjf03041
]
131077991
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
131077991
Spliceosome [BR:
cjf03041
]
Complex B
Other components
Prp19-related factors
131077991
Complex C
131077991
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
Mad3_BUB1_I
TPR_8
TPR_15
ARM_TT21_C
ARM_TT21
Cwf_Cwc_15
PPR
Motif
Other DBs
NCBI-GeneID:
131077991
NCBI-ProteinID:
XP_057871587
LinkDB
All DBs
Position
5:complement(14572890..14600638)
Genome browser
AA seq
925 aa
AA seq
DB search
MEDLLPSEDDLVYEEEILRNPFTLKLWWRYLIARRDAPFERRAIIYERAVKALPGSYKLW
HAYLREKMALVRGLPITHSKYENLNNTFERALVTMHKMPRIWIMYLQILTEQKFLTRARR
TFDRALCSLPVTQHDRVWEPYLQFVSQKGVPVETSLRVYRRYLLFDPTHIEDFIEFLLNS
ELWQEAAERLAGVLNDAGFWSIKGKTKHQLWLELCDLLTRHANEVKGLKVDAIIRGGIRK
FSDEVGRLWTSLADYYIRRGLFEKARDIYEEGMMAVITVRDFSIIFDAYTQFEESMLAAK
METMGLSDEDEEDGDGELQGAKKPASGSAQGKKGAVDKMAKDVVAGCWLSDDNDIDLRLA
RLENLMNRRPELVSSVLLRQNPHNVHEWHKRAKLFKDNPTRQILTFTEAVKTVDPMKAVG
KPHTLWVSFAHLYENHKDVGNARIIFEKAVQVNYKTVDDLASVWCEWAEMELRHKNFKGA
LELMRRATAEPSVEVKRRVAADGNEPVQMRLHRSLKLWTFYVDLEESLGTLESSRAVYER
ILDLKIATPQIIINYAHLLEENKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVIRYK
GSKLERARDLFEQAVEKAPAENVKPLYLQYAKLEEDYGLARHAMEVYDRAAKAVPDHEKM
EIYDLYIARAAENFGVPKTRDIYLKAIESELPDKYVKVMCMNFAELERKLGEIDRARNIY
VYCAQMADPRSDQEVWNKWHEFEVQHGNEDTFREMLRIKRSVSASYSQTHFILPEYLMQK
DQGKLTLEETVDTLKRAGVPEDEMAVLERQLAPAAVSSLAPKDAMRSLGFVSAGVDSQAG
VMRTADGGRKVTANPEDIELQEESDEDNENDERVEVAQKDVPSAVFGGLVNNTKTQDSEG
DDDRKQREREEPMGALERIKRQRRQ
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atggaggatctcttgcccagcgaagatgatctggtgtacgaagaagaaatattgcgaaac
ccgttcacgctgaagctgtggtggcgctatctgattgcacggcgcgacgctccttttgag
agaagggccataatctacgagcgcgctgtcaaagcgctgccgggaagctataagctatgg
cacgcgtatctccgcgagaaaatggccctggtgcggggcctccccataacgcacagcaaa
tatgaaaatctcaacaatacgtttgagagagccttggtcacaatgcacaagatgcctagg
atttggatcatgtacctgcagattttgacggagcagaagtttttgacgcgggcgaggagg
acatttgacagggctttgtgttcgttgcctgtgacgcaacatgatagggtttgggaacct
tacttgcaattcgttagtcagaaaggggtgccagtggaaacatcgcttagggtttacaga
aggtatttgttgtttgatccaactcatattgaagattttattgaattcttgcttaacagt
gaattgtggcaagaggctgcggagcggctcgccggggtcttgaacgatgcgggtttttgg
tcaataaaggggaagacgaagcatcaattgtggctcgagttgtgcgatttgttgaccaga
catgccaatgaggtgaaggggttgaaggtcgatgctattatcagagggggaattaggaag
tttagtgatgaggttgggaggctgtggacgagccttgcagattattacatccggcgtggg
ctgttcgagaaggcgagggatatttatgaggaggggatgatggcggtgattactgttagg
gattttagtattatctttgatgcatatacacagtttgaggaaagtatgctagcggcaaaa
atggagactatgggtcttagtgatgaggatgaagaggatggcgatggggagttgcaggga
gcgaagaagccagcgtcggggagtgctcagggcaagaagggagcagtggataagatggca
aaggatgtcgttgcaggctgctggctgtccgatgacaatgatattgatctcaggttggct
agacttgagaatctgatgaaccgacggcctgagctcgtcagtagtgtgcttttaagacag
aatcctcacaatgtgcatgagtggcataagagagcaaagcttttcaaggacaatcctaca
aggcaaatcttaacttttactgaagctgtgaaaacagtggatccaatgaaagctgttggg
aagccacatactttgtgggtttcctttgcacacttatatgaaaatcacaaggatgttgga
aatgcaaggataatttttgagaaagctgtgcaagtgaattacaaaacagtggatgatttg
gctagtgtttggtgtgagtgggcagaaatggagttgaggcacaagaattttaaaggtgca
cttgaacttatgcgcagggcaacagcagaaccttctgtggaagtcaagcgcagagttgct
gctgatggcaatgaaccagtacagatgaggctgcataggtcattgaagctttggacattc
tatgtggacttggaggagagtctaggaacactagaatcatcacgtgcagtatatgaacgg
atacttgatttaaagattgccactccacaaatcattataaattatgcacatcttctagag
gagaataaatattttgaggatgcatttaaagtatatgaaagaggtgtcaaaatcttcaaa
tatccacatgtgaaagatatttgggtgacctatctctcaaaatttgtaatcagatataag
gggtcaaagttggaacgtgccagggacttatttgagcaagcagttgagaaggcaccagct
gaaaatgtaaaaccattgtatttgcaatatgccaagttggaagaggactatggacttgca
cggcatgcaatggaagtgtatgaccgcgctgcaaaggctgttcctgatcatgagaaaatg
gagatatatgatctttacattgctcgtgcagcagaaaattttggagttcccaaaaccagg
gatatttatctgaaagctattgaatcagagctaccagataaatatgtgaaggtaatgtgt
atgaattttgctgagctggagagaaaattgggggagatagatcgggcacgtaatatttat
gtatactgtgcacaaatggctgatccacgttctgatcaagaagtctggaacaagtggcat
gagtttgaggtacagcatgggaatgaggataccttcagggaaatgcttcgaatcaaacgc
agtgtgtcggctagctacagtcagacacattttatactaccagaatatttgatgcaaaag
gatcagggaaagctgacacttgaggagacagttgacacacttaagcgggctggtgtgcct
gaagatgaaatggctgttttggaaagacaattagcgccagcagctgtttccagcttggct
ccgaaagatgcaatgagatcattgggatttgttagtgctggagtggactcccaagctggg
gtgatgcgcacagcagatggaggtaggaaggtaactgctaatccggaagatattgaattg
caagaagagagtgatgaggacaacgagaatgatgaaagggttgaagttgcacaaaaagat
gtcccatctgccgtttttggaggattggtaaacaacacaaagacacaagacagtgaaggg
gatgatgatagaaaacaaagagaacgagaagaacccatgggtgctcttgagagaataaaa
aggcaaaggagacaataa
DBGET
integrated database retrieval system
