Cryptomeria japonica (Japanese cedar): 131078733
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Entry
131078733 CDS
T10556
Name
(RefSeq) probable ubiquitin conjugation factor E4
KO
K10597
ubiquitin conjugation factor E4 B [EC:
2.3.2.27
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf04120
Ubiquitin mediated proteolysis
cjf04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
131078733
04120 Ubiquitin mediated proteolysis
131078733
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
cjf04121
]
131078733
Enzymes [BR:
cjf01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
131078733
Ubiquitin system [BR:
cjf04121
]
Ubiquitin ligases (E3)
U-box type E3
131078733
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ufd2P_core
U-box
baeRF_family5
Motif
Other DBs
NCBI-GeneID:
131078733
NCBI-ProteinID:
XP_057872482
LinkDB
All DBs
Position
9:complement(311321822..311449327)
Genome browser
AA seq
1014 aa
AA seq
DB search
MAQAKPNRSPAEVEDIILRRIFQVTLESGRDHVPSPVYLEQTAAEVLSEGRPLLLSMDIM
ERILIDRLSIPNLEPPLKYLVQCYRRAQEEIRKIPSMRDKSLSVKMEEMAKQARQLAVSY
SRIVLGNPDMFPQSALEKSYLLDLFMSGVSSSYDTFGESSASGITVPLGFLEDFLRDFEE
ESLDPILKQLYDDLKLAMRKVASPLQSCQVPLAVLKHLIEIPVCVKALVNHPSWIPKGDH
VDGRFIEIESILGPFFHVSALPDHVIFTREEQDVGQQCFSNADTRRPADLSSSFTTIKTV
MNQIYEGLHFVLYALLKNSNTREKVLEYLAEVIKKNAARAQINVNPFKCASSGMFVSLSA
VMLKLCEPFLGDSTKMNLIDANYVLCNGRIDCRGLTAIHASSEEIATWVDRRNYARTEGY
RQLQHQKEQEERRVLQTQGATSSGSLQSFNSVGVNTIPRSASDGRLTKYSFVTECFFMTA
RILNLGLLKVVSDFQSLLQDLRRCQDALETLEAQHGPGAPPQLEQEINNAKLEIEHLSQQ
RFCYDAQICKDIELLQQALSFYRLMLVWLVNIVGGFRMPLPAECPMEFASMPEHFVDDGI
ELLLFTSRLPKALDGVVLDDFMNFIIMFMASPLYIKNPYLRAKMVNVLNAWMPEKSKSSA
MSTLFEGHPLALEYLVFNLMKLYVDIEFTGSHTQFYDKFNIRHHIAELLEYLWQVPSHRN
AWKGIARSQEKGMYLNFLNFLINDSIFLLDESFNMISELKKMEAEMNTVEWEQRTPQERQ
ERTRHFHQQEQYVRWDMTLANEDVGMLAYTSAEITSPFLLPEMVERVANMLNYFLSQLVG
PQRKTLTLRDPEKYEFRPKKLLKQIAEIYVHLSRGDKDNVFPSAVSSDGRSYKDQLFSEA
AELLRRIGEDGRIIQEFVDLSAKARAAASEAMDTESMLGDIPDDFLDPIQFTLMRDPVIL
PSSRTTVDRPTIQRHLLSDATDPFNRSLLTPEMLIPNTELKNKIEEFIRSKSRI
NT seq
3045 nt
NT seq
+upstream
nt +downstream
nt
atggcacaagctaagccaaacagaagccctgcggaggtggaggatattatactgcgtcgt
atatttcaagtgactttagaatctggaagggatcatgtaccgtccccggtgtatttagag
cagacagctgctgaagtactgagtgaaggcaggcccttacttttgtctatggacataatg
gagagaattttgattgacaggctgtccattcctaaccttgaaccacctttaaagtatctg
gtccagtgctatagaagagcacaggaagagatacggaaaataccttctatgagggataaa
agtttgagcgttaaaatggaagagatggcaaagcaagcaagacagttggccgtttcctat
agtaggattgttttgggaaacccagatatgtttcctcagtctgcccttgaaaagtcatat
cttttggatctctttatgtccggagtttctagtagttacgatacatttggtgagagcagt
gcttccggcattaccgtaccacttgggtttctggaggattttttgagggattttgaagag
gaaagtctagatcctattttgaagcagctttatgatgatttgaagttagctatgcgcaag
gtggcatcacctcttcaaagctgtcaggtccccttggcagttcttaaacatttgattgaa
attcctgtttgtgtgaaagcccttgtgaatcatccttcttggattcccaaaggcgatcac
gtggatggacgatttatcgaaattgaaagcattctgggtccctttttccatgtcagtgct
ttacctgatcatgtcatcttcacaagagaagaacaggatgttgggcagcaatgcttttct
aatgcagacactcgacgtccagccgatttatcttcttcattcactacaattaagacggtc
atgaatcagatatatgaaggccttcattttgtcctttatgctctcctgaagaattccaac
acgcgtgaaaaagttcttgagtacttggcagaagttataaagaaaaatgctgcaagggca
caaataaatgtgaacccgtttaaatgtgcaagctctggcatgtttgtcagtctcagtgct
gtcatgcttaagctttgtgaaccatttttaggtgattcgacaaaaatgaacttaattgat
gcaaactacgtactttgtaatggccgaatcgattgtcgaggattgacagcaattcatgct
tcgtcagaagagattgcaacatgggtggatagaaggaactatgcacgaactgaaggatat
aggcagcttcaacatcagaaggaacaggaagagcgtcgtgtactacagacacaaggggcc
acaagctctggcagcctacagtcctttaattctgttggtgtcaataccataccgagatct
gcaagtgatggaaggctgaccaaatattcttttgttactgaatgttttttcatgacagca
aggatactgaacttgggccttttgaaagtggtgtctgacttccaaagtctattacaagat
cttagaagatgtcaagatgcacttgagactcttgaagcccaacatggtcccggagctcct
cctcaattggagcaagagattaacaatgcaaagttagaaatagagcatctttctcaacaa
aggttttgttacgatgctcaaatatgtaaggacatcgaacttcttcagcaagctttaagc
ttctacaggttaatgctggtgtggctggttaatattgttggtggattcagaatgcctttg
ccagctgaatgcccaatggaatttgcttctatgccagagcactttgttgatgatggaata
gagcttctactctttacttctcgacttccaaaagctttagatggtgttgtattggatgat
ttcatgaattttattataatgtttatggcaagtccactatatatcaaaaacccttatcta
agggccaagatggtgaatgttttgaatgcctggatgccagagaaaagtaaatcatcagca
atgtccactctgtttgaaggacacccccttgctcttgagtatcttgtgtttaatcttatg
aagctctatgtggatattgaatttactggatctcacactcagttctatgataagttcaat
atacgacatcatattgcagaacttctggagtatttgtggcaggtgccaagccatcgcaat
gcatggaaagggattgcacgatcacaggaaaagggaatgtatttgaacttcttaaatttt
ctcatcaatgatagtatctttcttcttgatgagagtttcaatatgatttctgaacttaaa
aagatggaagctgaaatgaacactgtagaatgggagcagcgaacaccgcaagagaggcag
gaaaggacacgccattttcaccaacaagagcaatatgttcggtgggacatgaccttggca
aatgaagatgtggggatgttagcatacacgtctgctgaaatcacatcaccatttttactt
ccagaaatggttgaaagggtagctaatatgctcaactatttcttgtcacaactggttggt
cctcaacgaaaaactctgaccctgagggatccagagaaatatgaattcagaccaaagaaa
cttttaaaacaaattgccgaaatatacgttcacctttccaggggagacaaggataatgta
tttccatcagctgtatcaagcgatggtcgttcatataaagatcagttattttcagaagca
gctgaacttctaagaaggataggtgaagatgggaggataattcaagagtttgttgacctt
agtgcaaaagcaagagctgctgctagtgaagcaatggacactgaatctatgcttggagac
ataccagatgatttccttgatccaattcagttcacattgatgagggatcctgtaatcttg
ccttcgtcaagaacaactgtggaccgtccaacaatacaaagacatctattgagtgatgct
actgatccattcaatcgatctcttctcactcctgagatgctgattcctaacacggagctg
aagaacaaaattgaagagttcatcaggagcaagtcaaggatttaa
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integrated database retrieval system
