Cryptomeria japonica (Japanese cedar): 131079341
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Entry
131079341 CDS
T10556
Name
(RefSeq) pre-mRNA-processing factor 39-1 isoform X1
KO
K13217
pre-mRNA-processing factor 39
Organism
cjf Cryptomeria japonica (Japanese cedar)
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
cjf03041
]
131079341
Spliceosome [BR:
cjf03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
131079341
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
Suf
TPR_14
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
NRDE-2
TPR_16
Motif
Other DBs
NCBI-GeneID:
131079341
NCBI-ProteinID:
XP_057873240
LinkDB
All DBs
Position
11:complement(78854226..78864879)
Genome browser
AA seq
870 aa
AA seq
DB search
MGDQDSQSLPVIDYASMDNSIMPDANKYVPDQENALPQHSPAVEYAADAVVLPDGTSRPS
AALEAGDASALSGEVEGIAHQDSVTKQGPQPPAFVMEDTTAFSEGNKVVTGQDTPMEQVT
QSSVYEGMDASVNYDLNKYMGNQDPTTNQEAVNISDINQYNSAEHHADGNGSIATVENKE
PEQTQYEEPLVAISTEEERLWGIVRANSADFTAWTSLIQETEKTAEDHLPKICKVYDAFL
AEFPLCYGYWKKYADHEARLGSAEKILEVYERAVQAVTYSVDIWMHYAMFAMATYEDPEI
IRRLFERGLSYVGTDYLSYPLWDKYIEYEYSQQEWSRLAQIYTRILQIPIQQLDRYFSSF
KELAASRPLLELRTAEENAAAAEAASMLAGREGGEKIGDGEEGAKPESVSLSEADELEKY
IGVREAMYKIAKEMDAKIRDFENAIRRPYFHVKPLDDAQLSNWHHYLDFIEKTNDFDRMV
KLFERCLIACANYPEYWIRYVQCMQAAGSMEVANDALVRSTQIFVKRQPEIHIFAARFKE
QLGDTVGARAEYQLLNTEIAPGLLDGVIKHANMEHRLGNLEAASSVFDMAIAAEKSKEHS
QSLHLLFIQYSRYLQIVEGNAERAKEVLTEAFQLLPYSKPLMEVAIHLESIKSGSKQVEF
LDSLVEQMLAPKPDGSYELTAADREEISSIFLEFVDLFGDINAITKAEYRHRQLFLPHKN
TGESKKRPAQDSLTSDKSKVAKSYAAVPAAVSPAQSGAAAYPNGQAQWGAGYAQQSQSWQ
QPPAQQAPQAQPQQWMPGYGQQAGYAPYAGYANYGPPQQPTNPAQQPSYAGYGQGYPTQA
FPQQNYGQPAPAYTPPQQQAAAPQYYPGYY
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atgggagatcaggattcccaatctcttccagtcattgactatgcttcaatggacaatagt
attatgcccgatgcaaataaatatgttccagaccaggagaatgcactgcctcagcattct
ccagctgtagagtatgctgcagatgctgttgttttgcctgatggaacttctcgcccctct
gctgctcttgaggctggagatgcttctgctttatctggtgaagttgaaggaattgcacat
caagattctgtgacaaagcaaggccctcaacctcctgcttttgtaatggaagatactact
gctttttctgagggaaacaaagttgtaacaggacaggacactcctatggaacaagttact
caatcgtctgtgtatgaaggtatggacgcttctgtgaattatgatctgaataaatacatg
ggaaatcaggatcctactacaaatcaagaagctgttaatatatcagatataaaccaatat
aattcagcagaacatcatgcggatgggaatggtagtattgcgactgtagagaacaaggaa
cctgaacaaacacaatatgaggagcccctagttgccatttcaacagaagaggaacggttg
tggggcattgtaagggcaaactctgcagatttcactgcatggacctcattgatccaagaa
actgagaaaacggcagaggatcacttgccaaaaatttgtaaagtttatgatgctttccta
gccgagtttcccttatgttatggatactggaagaaatatgcagatcatgaggcacgattg
ggcagtgctgaaaagattctagaggtgtacgagagagccgttcaagctgtaacatattcg
gttgatatctggatgcattatgctatgtttgcaatggcgacatatgaagatccggaaatc
attcgaaggttatttgaacgaggcttgtcatatgttggaactgactatttgtcctatcct
ttatgggacaagtatattgaatatgaatattcacagcaggaatggagtcgccttgcacag
atttacacacgaattttacaaattcccattcagcagcttgaccgctattttagcagcttc
aaggaactagctgcttctcggcctctcttagagttgcgaactgcagaggaaaatgctgca
gctgcagaagcagcttccatgttggcaggtagagaaggaggtgaaaaaataggagatggt
gaggaaggagctaagcctgaaagtgttagtctatcggaagctgatgaacttgagaagtat
ataggtgtgagagaagcaatgtacaagatagcaaaagagatggatgcaaagattcgagat
tttgagaatgccattcgtcggccgtattttcatgttaagccattggatgatgcacaacta
agcaactggcatcactatcttgatttcattgagaaaaccaatgattttgatcggatggtg
aagctatttgagagatgtcttattgcatgtgcaaactaccctgaatactggatccggtat
gtgcaatgcatgcaagctgctggaagcatggaagttgcaaatgatgcgcttgtacggtct
acacagatttttgtgaagagacaaccagaaatacacatttttgcagctcggttcaaggaa
caactgggagacactgtgggggcccgtgcagagtatcagcttcttaatacagaaatagct
cctggccttctggatggtgtaattaaacatgccaatatggagcatcgtctgggaaacctg
gaagcagcatcctcagtatttgacatggctattgcagctgagaaaagcaaagagcactca
cagtcgctacatttgttatttattcagtactctcgctaccttcaaatagtggaagggaat
gcagagagagcaaaagaagttttgaccgaagcatttcagcttcttccttattcaaagcct
cttatggaggtagctattcatttggaatcaataaagtcaggttccaagcaagttgaattt
cttgattctttggtagaacaaatgctggctccaaaacctgatggatcctatgaattaact
gctgcagatagagaagagatatcaagtatatttttagagtttgtggacctttttggtgat
attaatgctattacaaaggcagagtatcgtcacaggcagttatttttgcctcataaaaac
actggtgaatctaagaagcgtcctgctcaagatagtcttacctctgataagtctaaagta
gccaagagttatgcagctgttcctgctgctgtgtctcctgcacagtctggtgcagctgct
tatccaaatggccaggctcagtggggtgccggctatgctcagcagtcgcaaagttggcag
cagccacctgctcagcaggctccccaagctcaacctcaacagtggatgcctggctatggt
caacaggctggctatgctccctatgctggttatgctaattatgggccacctcaacaacca
acaaacccagcacagcagccgagttatgcaggttatggtcaaggatatcctacacaggca
ttcccacaacaaaattatggacaacctgcacctgcttacacacctcctcagcagcaggct
gcggcaccacaatattatcctgggtattattga
DBGET
integrated database retrieval system
