Cryptomeria japonica (Japanese cedar): 131079979
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Entry
131079979 CDS
T10556
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03022
Basal transcription factors
cjf03420
Nucleotide excision repair
Brite
Enzymes [BR:
cjf01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
131079979
Transcription machinery [BR:
cjf03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
131079979
Chromosome and associated proteins [BR:
cjf03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
131079979
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
131079979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-GeneID:
131079979
NCBI-ProteinID:
XP_057874012
LinkDB
All DBs
Position
10:364248877..364411982
Genome browser
AA seq
756 aa
AA seq
DB search
MKFKIENLTVYFPYEHIYPEQHQYMVELKRALDAKGHCLLEMPTGTGKTITLLSLITSYQ
LSDPSVGKLIYCTRTVHEMEKVLAELRLLNDYQQKEIGSAAKTLALGLSSRKNLCLNEMV
QSASSRESVDAGCRKLTASWVRALAVENPNIETCQFYENYDKQGTEAILPPGVYTLHDLR
NFGRAKGWCPYFLARHMIQFANIVVYNYQYLLDPKVSGIISREMQKECIVVFDEAHNIDN
VCIEALSVNIREQTLTGATRNVNKMAEIVDRFKASDADRLRREYNRLVEGLAQRDDLPIS
DTWISNPILPDDIVREAVPGNIRRAEHFLSVLKRLVQYLKIRLRTEDVETEGTPQFVANV
TTQAGIDQKMLKFCYDRLHSLIVTLEITDTDEFLPIQTVCDFATLVGTYSRGFSIIIEPF
DERMPEVPDPILQLSCLDASLAIKPVFQRFQSVIITSGTLSPIDLYPRLLNFNPVISQAF
TMSLTRDCLCPMVLTRGSDHLPLSTKFDMRSDPGVVRNYGRLLLEMVATVPDGIVCFFVS
YSYMDGIINSWNEMGILKDIMQHKLVFIETQDVVETTLALDNYRRACDCGRGAVFFSVAR
GKVAEGIDFDRHYGRLVIMFGVPFQYTLSRILRARLDYLRETFQIKEGDFLTFDAVRQAA
QCVGRVIRSKADYGMMIFADKRYSRHDKRSKLPGWILKHLGNAHLNLSTDMAVHIAREFL
RKMAQPYDKAGSGGKKTLLTQEDIESMETQKSMALD
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcaaaatcgaaaatctgacagtctacttcccttacgagcacatatacccagag
caacaccagtacatggtggaactgaaacgagcactggacgcgaaaggccactgcctctta
gaaatgccgactggtacaggcaaaactataaccctcctctcccttatcaccagctaccaa
ttatccgacccctctgttgggaaactcatttactgtacacgcacagtccatgaaatggag
aaagttcttgcagaactacgcttattgaatgattaccagcaaaaagaaattggaagcgca
gccaaaactctggccctcggcctcagttccagaaaaaacctctgccttaatgaaatggtc
cagagcgcaagttccagagagagcgttgatgcgggttgcagaaaacttacagcttcttgg
gttagagctctagcggttgaaaatcctaatatcgaaacgtgtcaattttatgaaaattat
gacaagcaagggactgaagcaattttgccccctggggtttatacacttcatgacctaaga
aactttggtagggcgaaaggctggtgcccttattttttggcacggcatatgatccagttt
gcaaatattgttgtttataattatcagtatttgcttgatcccaaggtatctgggattata
tcaagggaaatgcagaaagagtgtattgtggtgtttgatgaggcacacaatattgataat
gtttgtattgaggcactcagcgtgaatatcagggagcaaactctcactggagctactagg
aatgttaataagatggctgagattgttgataggttcaaggcctcagatgcagatagactg
cgaagagaatataacaggctcgtggaaggattagcacaaagagatgatttgcctatctca
gacacatggatttcaaatcctattcttccagatgatatagtaagagaagctgtgccaggg
aatatcagacgagctgaacattttttatcagttttaaaaaggctagttcaatacctaaag
atccggctaagaactgaggatgtagaaactgaagggacacctcagtttgttgctaatgtt
actacacaagctggcatagaccaaaaaatgttgaaattctgctatgatcgtttacattct
cttatagtaactctggaaataactgacacagatgaatttctgccaattcaaactgtgtgt
gactttgccacattagtagggacatatagccgtggattttctattattattgagcctttt
gatgagagaatgccagaagttcctgatcctattttgcagcttagttgccttgatgcttct
ctggcaataaaaccagtgtttcaacgatttcaatctgtgataataacatcagggactctc
agtcccattgatctctaccctcgtcttctcaatttcaatccagttatttctcaggccttt
acaatgtcgttgactagagattgcttatgtccaatggtgcttacacgtggcagtgatcac
ttgcccttgagtaccaaatttgatatgcgtagtgatcctggtgttgtaaggaattacgga
cgtcttctgttagagatggtagctactgtgcctgatggcattgtttgcttctttgtcagt
tactcatacatggatggaataattaatagttggaatgaaatgggcattttaaaggatatt
atgcaacataagcttgtttttattgaaacacaagatgttgtagaaacaactttggcattg
gataactaccgtagggcatgtgattgtgggcgaggtgccgtattcttttctgttgcaaga
ggaaaagtggcagaaggaattgattttgatcggcattatgggcgccttgtgattatgttt
ggggttcctttccagtatactttgagcaggattctacgtgctagattggattatttaagg
gagacatttcagattaaagaaggagattttctcacttttgatgctgtgagacaagcagca
caatgtgttggccgtgtaattcgatcaaaagcagattatggaatgatgatatttgctgac
aaaagatacagtcggcatgataagcgttcaaaactgccaggatggatcttgaaacattta
ggcaatgcccatcttaatttaagtaccgacatggctgtgcatatagcacgtgaatttttg
cggaagatggctcaaccatatgacaaggcaggcagtggagggaaaaagactttgctaaca
caagaagacatagaaagcatggaaactcaaaaatcaatggcattagattga
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