KEGG   Cryptomeria japonica (Japanese cedar): 131855753
Entry
131855753         CDS       T10556                                 
Name
(RefSeq) protein ROOT INITIATION DEFECTIVE 3-like
  KO
K14829  pre-rRNA-processing protein IPI3
Organism
cjf  Cryptomeria japonica (Japanese cedar)
Brite
KEGG Orthology (KO) [BR:cjf00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03009 Ribosome biogenesis [BR:cjf03009]
    131855753
Ribosome biogenesis [BR:cjf03009]
 Eukaryotic type
  Pre-60S particles
   5-FMC complex
    131855753
SSDB
Motif
Pfam: Beta-prop_WDR3_1st Beta-prop_WDR5 WD40 Beta-prop_THOC3 WD40_Prp19 Beta-prop_WDR36-Utp21_2nd WD40_CDC20-Fz Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_WDHD1_1st WDR55 Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_EML Beta-prop_TEP1_2nd Beta-prop_TEP1_C NBCH_WD40 Beta-prop_DCAF4 Beta-prop_VPS8 Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st ANAPC4_WD40 WD40_Gbeta WD40_RFWD3 WD40_MABP1-WDR62_1st Beta-prop_Vps41 Beta-prop_IFT140_1st Beta-prop_WDR41 Beta-prop_SPT8 WDR54 Beta-prop_RIG_2nd Ge1_WD40 Beta-prop_SCAP WDR90_beta-prop_4th Beta-prop_HPS5 Beta-prop_Aladin
Other DBs
NCBI-GeneID: 131855753
NCBI-ProteinID: XP_059075927
LinkDB
Position
4:complement(538860172..538863089)
AA seq 479 aa
MFLKPKTRMASEILVASSTADSGNMTVWDLSTGLELMHFYSCASPRNAITSIGSDAHFIA
ASQMHKTFSITAAPICFWTWGNPQIHNRIFPLEQIGPLACTRNGVYLLGGGISGQIHIWE
LPTGRLIRSWHAHEKSVSCLIFNDDESLLVSGGDDGFLVVWPLIGILDIAESLDRDAQSL
SLHTWSAHSLPVTGITSGIGGCNAIAVSCSLDCTVKIWSLGLGTHLRTLRLPCGINAVVV
DPSEHALYAGGIDGRIYVAVLKVCFRGNNGISDENGIIGSLFDHSGTITSLSFSMDGATL
VSASEDCTIRLWDTSANCVVRMFNHSMGPVSSILVLPLLPQISRSSYHGLQLGSHKSNVE
TTNESFSDSSYLKDMPRLFLPNAERAALGLEFQCHSIGMVKLQIKELETMKANLAVVNED
QQRTLNMLDKLIQVYHKFTGLCLSEAVAGNQNLDTDRSQGMDNILFLDKSIDESRRMLQ
NT seq 1440 nt   +upstreamnt  +downstreamnt
atgtttttgaaacccaaaactcggatggcttcagaaatattggtagcaagttcaacagca
gattcaggtaacatgacagtgtgggatttatccacaggtttagagctcatgcatttctat
agctgtgcatcccctagaaatgcaatcacttccattggcagtgacgctcacttcattgca
gcttcgcaaatgcacaaaacattttccattacagcggcacccatttgcttttggacatgg
ggtaacccccaaattcataacagaatattcccccttgaacagattggccctctggcttgc
acacgaaacggagtctatcttcttggtggtggaatttcaggccaaatccacatatgggag
ttacccacaggacgactgattcgttcatggcatgcccatgaaaaatctgtaagttgtcta
atctttaacgacgatgaatcattgttggtttcaggcggcgacgacggttttcttgttgtt
tggcctcttattggaatcctagacattgcagagagcttagatagggatgcccaatcgcta
agtttgcatacttggtctgctcatagtttgcctgtgactggaattacttctggtattggg
ggctgcaatgcaattgctgtttcttgttcattggattgcactgtgaaaatttggagccta
ggtttggggacccatttaagaacgctcaggttgccttgtgggataaatgctgtcgttgtt
gatccttctgaacatgccctctatgccgggggaatagatgggaggatctatgttgctgtt
cttaaagtatgttttagaggaaacaatgggattagtgacgagaatgggataattggttca
ctttttgatcacagtggaactataacatccctgagttttagcatggatggagctactttg
gtgtcggcgtctgaggattgtaccattcgtctgtgggatactagcgcgaactgtgttgtt
aggatgtttaaccatagtatgggtcctgtgagcagtattttagtgctgcccctgctgcca
caaatttcaaggtcttcctatcatgggttacagttgggtagtcacaagagcaatgttgag
actacgaatgagagttttagtgattctagttatctcaaggatatgccaaggcttttctta
ccaaatgctgaaagagctgctcttggtttagaatttcagtgccatagcattggaatggtg
aagctgcaaataaaagagttggagaccatgaaagcgaatttagcagtagtgaatgaggat
cagcaacgtaccttaaatatgcttgataaattgatacaagtttaccataagttcactgga
ctttgcttgtctgaggctgtagctggcaatcagaacctagatacagacagatcacaggga
atggataatatattgtttctggataaaagcatagatgagagtcgccgtatgttgcagtaa

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