Cryptomeria japonica (Japanese cedar): 131856593
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Entry
131856593 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131856593
03420 Nucleotide excision repair
131856593
03430 Mismatch repair
131856593
03440 Homologous recombination
131856593
03460 Fanconi anemia pathway
131856593
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131856593
03032 DNA replication proteins [BR:
cjf03032
]
131856593
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131856593
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131856593
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131856593
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131856593
MMR (mismatch excision repair)
131856593
DSBR (double strand breaks repair)
HR (homologous recombination)
131856593
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
tRNA_anti-codon
CDC24_OB3
DUF223
ManC_GMP_beta-helix
Motif
Other DBs
NCBI-GeneID:
131856593
NCBI-ProteinID:
XP_059064419
LinkDB
All DBs
Position
7:215759460..215760881
Genome browser
AA seq
473 aa
AA seq
DB search
MSEDTSSSSKRSLQFSVELPSPQSATFENISPIKSLNPYQNKWTIKGRVTHKRSINPYST
ATKNGHVFSFDIVDTKGCEVRVTCFDEIAELHSDRVEVGSHYVISKGSIKEANTRYNKLN
SYLEIIMSGASILKCCGHEEVPNQEHSPFILISEVFQVTNNTLVDIIGVVVHVGDIIPIH
RKDGTQTQKRVVRINDLSGSPIDINLWGPTSHQRGLELKNMLTSDSVLILVVRNARVGYF
NGKVVNVIAATTLHINPPFLEAEPLILRGNLPLHTPYFSAAITHINGKYTRMTISSIRER
MSVKPETIETTLLVVLRFVNVTNKTLYYIACPLKVNEKPCKKKCTQQVDDSWFCPRCEMT
MAECNYSYLLPMKLQNVTGTIWATTFDEVGTQLINKIAKELCALQNDTITTQTPCSMINK
LVSHRYSFTLLVSTNTCNSESKMKVTINKIYFVDYKSECDALLVEIACLSTQA
NT seq
1422 nt
NT seq
+upstream
nt +downstream
nt
atgagtgaagatacatcatcatcgtctaaacgttctcttcagttttctgttgaattacca
tccccgcaaagtgcaacctttgaaaatataagcccaatcaaaagtttaaatccataccaa
aacaaatggacaatcaaaggcagagttactcataaacggtctataaatccatacagtaca
gctactaagaatggccacgtctttagttttgacattgtcgacactaagggatgtgaagtt
cgagttacatgttttgacgaaatagctgaactacattctgaccgtgtggaagtgggttca
cattatgtcatttctaaagggtccattaaggaagcaaacacaaggtacaacaaactgaac
agttatttagagatcatcatgtctggtgcctccatattaaaatgttgcggccatgaagaa
gtaccaaatcaagagcactcccctttcattcttattagtgaagtttttcaggtaactaat
aatacattagttgacatcattggtgttgttgtacacgttggagatatcattccaatccat
aggaaagatggcactcaaacacagaagagagttgttagaattaatgatctctcagggtca
ccaattgatatcaacctatggggtccaacatcacatcaaagaggactagaattaaaaaac
atgttaactagtgatagtgttcttatacttgttgtacgtaatgctcgggttggttatttt
aatggtaaggttgttaacgtaatagctgcaacaacattacatattaatccacctttccta
gaggcagaacccctcatattaagaggaaatcttcccttgcatactccatatttttctgca
gcaattacccacattaatggcaaatacactagaatgactatttcatcaatccgtgaacgt
atgagtgtgaaaccagaaactattgaaaccactttattggttgttctaagatttgtaaac
gtaacaaataaaactttatattacatagcttgtccactaaaagtaaatgaaaagccttgt
aaaaaaaaatgcactcaacaggttgatgattcatggttttgtcctagatgtgaaatgacc
atggcagaatgcaattacagttaccttttaccaatgaagctacaaaatgtaacaggtact
atttgggctactacttttgatgaggttggaactcaattgataaataaaattgcaaaagag
ctttgtgcactgcaaaatgatacgataacaacacaaacaccttgctctatgattaataaa
cttgtctcacatcgctactcattcacactgctagtttctactaacacgtgcaactctgaa
tcaaagatgaaagttacaatcaacaaaatctattttgttgactataaatctgagtgtgat
gcattacttgtagagattgcttgcctctctacacaagcttag
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