Cryptomeria japonica (Japanese cedar): 131857037
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Entry
131857037 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131857037
03420 Nucleotide excision repair
131857037
03430 Mismatch repair
131857037
03440 Homologous recombination
131857037
03460 Fanconi anemia pathway
131857037
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131857037
03032 DNA replication proteins [BR:
cjf03032
]
131857037
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131857037
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131857037
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131857037
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131857037
MMR (mismatch excision repair)
131857037
DSBR (double strand breaks repair)
HR (homologous recombination)
131857037
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
CDC24_OB3
DUF223
Motif
Other DBs
NCBI-GeneID:
131857037
NCBI-ProteinID:
XP_059065011
LinkDB
All DBs
Position
7:854539736..854555940
Genome browser
AA seq
694 aa
AA seq
DB search
MYPSSLYKPESNGRMLLPCQKTTFTLVDFCKAFSMLLCELQAMWFECARVVTLFMLFKCA
YFLLPCACKVVTLFMLFNCVLAGLLFCLCCLTILGRDYFQSARHFSITLDIVIELGFVVA
LSVLLGLFVRFTSCMVLHCKAKTQEYAPTPFVIQSINAGDDLPSALLQVLSFQKMQNNTD
DTDIHKLMLYDGTYMQLAILPSTYATLIDSDILKIGTIVHLSSYTCRYIWSTRTIVILSL
EVKQSDYPFFGKPVYLFKEHQLEMMSKDIPSTSKRSLQFATELPSLQTTTSKNISPIKTL
NPYQNKWTIKGRVTHKRPIKAYSTTTKNGHVFSFDIVDCEGFEIRVTCFDEIAQLHSNRV
DVGSHYIISKGSIKETNARYNKLNSHFEITLSVASILKRCSNEEQSDQQRPPFTPISELF
HLTNNTLVDINGLVLYVGDIIPIHRKDGSQTQKRIVKINDLSDSTIDINLWGPMVVQKGL
ELKNMLTNDSVVILALHNARVGYFNGKLINITATTTLHINPTFLKVKPLTLRGKESLLVL
PFVAETIHIDGKYTRMTISSICERMSIKPEIIQTNLLAVLRFVNVTDQNFYYAVCPLIVN
GRPCKKKCTQQVDDSWFCPRCEMTMQDGNYSYFLPVKLQDATGTLWATAFDEGGIHLLHK
TAKELCALQNDSTTTETPYSVIFTSLFIHTAGFH
NT seq
2085 nt
NT seq
+upstream
nt +downstream
nt
atgtacccaagctcactgtacaagcctgagagcaatggaagaatgcttctaccatgccag
aagactacatttactcttgttgacttttgtaaggcattttcgatgctgctttgtgagctt
caagccatgtggtttgaatgtgcaagggttgttactttgtttatgttgtttaagtgtgct
tattttctgcttccgtgtgcttgcaaggttgttactttgtttatgttgtttaactgtgtg
cttgcagggttgttattctgtttatgttgtttaactattttggggcgtgactacttccag
tctgcaaggcattttagcataaccttggatatagtcatcgagttaggttttgttgtggct
ctaagtgttttgttgggcttgtttgtgaggttcacgtcgtgcatggttttacattgcaag
gcaaaaacccaagagtatgcccctaccccttttgtaattcaatctatcaatgctggggat
gaccttccttcagcattgctacaagttttgtcatttcagaaaatgcagaacaacacagat
gatactgacatacataaattaatgttatatgatggcacatacatgcaattggcaatcttg
ccttctacatatgctactctgatagattcagatattctaaaaataggcacaatagtccac
ttatcgagttatacatgccgatacatatggagcacaaggactattgtaatacttagtttg
gaagtgaaacaaagtgattacccattctttggtaaaccagtatacctgttcaaagaacac
caactagaaatgatgtctaaggacataccatcaacatctaaacgatctcttcaatttgcc
actgaattgccatccctgcaaacaacaacttctaaaaatataagccctataaaaactttg
aatccataccagaataaatggacaatcaaagggagagttactcataaacgccctattaag
gcatatagcacaaccacaaaaaatggccatgtgtttagctttgacattgttgactgtgag
ggctttgaaattagagttacatgttttgatgagatagctcagttacactctaaccgtgtg
gacgtaggttcacattatattatttcaaagggatccattaaggagacaaatgcaaggtac
aacaaactcaacagtcattttgaaatcaccttgtctgttgcatccatactgaaacgctgc
agcaatgaagaacaatcagatcaacaacgtcctcctttcacgcccattagtgaattgttt
catctaacaaataacacgttggttgacataaatggccttgttctatatgttggagatatc
attccaatacacaggaaagatggcagtcaaacacaaaaacgtattgtgaaaattaatgat
ctatctgattcaacaattgacatcaacctatggggtccaatggtagtacaaaaaggccta
gaattgaaaaatatgttaaccaatgatagtgtggttatccttgctttgcataatgctcgt
gttggctatttcaatgggaagcttataaacataacagctacgaccacattacatatcaac
ccaacttttctaaaagtcaaacctctaacattaagagggaaggagtctttgcttgttcta
ccttttgttgcagaaactatccacatagatggaaaatatactagaatgactatttcttca
atctgtgagaggatgagtatcaaaccagaaataattcagactaatttgctagctgttcta
cgttttgtaaacgtaactgaccaaaatttctattacgcagtttgtccactaatagtcaat
ggtaggccttgcaaaaaaaaatgtacacagcaagttgatgattcttggttttgccctaga
tgtgaaatgactatgcaagacggtaattatagttacttcttgccagtaaagttacaagat
gcaacaggtactctatgggccactgcatttgatgagggtggcattcacttgctacacaaa
actgcaaaagagctttgtgcactacaaaatgattcaacaacaacagaaacaccttactca
gtgattttcacatcactattcattcacactgctggtttccactga
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