Cryptomeria japonica (Japanese cedar): 131857475
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Entry
131857475 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131857475
03420 Nucleotide excision repair
131857475
03430 Mismatch repair
131857475
03440 Homologous recombination
131857475
03460 Fanconi anemia pathway
131857475
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131857475
03032 DNA replication proteins [BR:
cjf03032
]
131857475
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131857475
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131857475
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131857475
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131857475
MMR (mismatch excision repair)
131857475
DSBR (double strand breaks repair)
HR (homologous recombination)
131857475
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
131857475
NCBI-ProteinID:
XP_059066097
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All DBs
Position
8:9572994..9574193
Genome browser
AA seq
399 aa
AA seq
DB search
MSEDRPSTSKQLLQFSTELPSPQTKTSKNISPIKTLNPYQNKWTIKGRVTHKWPIKAYST
ATKNGHVFIFDIVDCDGSEIRITCFDEIAKLHSNRVDIGSHYIISKGSIKEANARYNKLN
SHLEITLSDTSILKCCTNEEQANQQTPPFTPIGELFQLTNNTLVDVIGLVLYAGDIIPIH
RKDGSQTQKRVVKINDLSSSTIDINLWGPIAEQKGLEVKNMLTNDSVVILSLRNARVGYF
NGKLVNITAATTLHINPSFLEANLLTLRGNDPLLVVPFVAETIHIDGKYSRMTISSICER
MSIKPETIQTTLLAVLCYVNVNDQNFYYTTCPLMVNGRPCKKKCTQQADDSWFYSRCQMS
MQDCNYSYLLPLKLQDAIGTLWGTAFDEGGNHLLHKTAR
NT seq
1200 nt
NT seq
+upstream
nt +downstream
nt
atgtctgaggacagaccatcaacatctaaacagttgcttcagttttcaactgaattgcca
tccccacaaacaaaaacttctaaaaatataagtcctattaaaactttgaatccataccaa
aataaatggacaatcaaagggagagttactcataaatggcctattaaggcatatagcaca
gccaccaaaaatggccatgtgtttatctttgacattgttgattgtgatggttctgaaatt
agaattacatgttttgatgagatagctaagttacactctaaccgtgtggacataggttca
cattatattatttcaaaaggatctattaaggaagcaaatgcaaggtacaacaaactaaac
agtcatttagaaatcaccctgtctgatacatccatactaaaatgctgcactaacgaagaa
caagcaaatcaacaaactcctcctttcacacccattggtgaattgtttcaactaacaaat
aatacactagttgacgttattggtcttgttctatatgctggagatatcattcctattcac
aggaaagatggcagtcaaacacaaaaacgtgtggtgaaaattaatgatctatctagttca
acaattgacatcaacttatggggcccaatagcagaacaaaagggcctagaagtgaaaaat
atgttgaccaatgatagtgtcgttatcctttctttacgtaatgctcgtgttggctatttc
aatgggaagcttgtaaacataacagctgcaacaacattacatatcaacccaagttttcta
gaagcaaaccttctaacattaagaggaaatgaccctttgcttgttgtaccctttgttgca
gaaactatccacatagatggaaaatatagtagaatgacaatctcttcaatctgtgagcgg
atgagcatcaaaccagaaacaattcagacaacattgctagctgttctatgctatgtcaac
gtcaatgaccaaaatttctattacacaacttgcccactgatggtcaatggaaggccttgc
aagaaaaaatgtacacagcaagctgatgattcttggttctactctagatgtcaaatgagt
atgcaagactgtaattatagttacctcttgcctctaaagttgcaagatgccataggtact
ctatggggaactgcatttgatgagggtggcaatcacttgctacacaaaactgcaagatag
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