Cryptomeria japonica (Japanese cedar): 131857953
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Entry
131857953 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131857953
03420 Nucleotide excision repair
131857953
03430 Mismatch repair
131857953
03440 Homologous recombination
131857953
03460 Fanconi anemia pathway
131857953
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131857953
03032 DNA replication proteins [BR:
cjf03032
]
131857953
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131857953
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131857953
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131857953
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131857953
MMR (mismatch excision repair)
131857953
DSBR (double strand breaks repair)
HR (homologous recombination)
131857953
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
CDC24_OB3
tRNA_anti-codon
SH3_Rv0428c
zf-FPG_IleRS
Motif
Other DBs
NCBI-GeneID:
131857953
NCBI-ProteinID:
XP_059066733
LinkDB
All DBs
Position
8:complement(738261217..738262470)
Genome browser
AA seq
417 aa
AA seq
DB search
MHQYNTIKCNGQVFSFDIVDEEGCEVRITCFDEIAELHYHRVEKGAWYVVFKDSVKDAST
VYNKLNNHLEIILTETSVLKRCASDVAETEKKLQFNPINKVLTTSNNTLVDVIGVVVNFE
EILVIRRKDGSTVKKRIVKINDMSTFTIDVNLWRPPSEQLGNDLKNMHASGTFVILAIQN
ERVGYFNGKFINISASMTFEINPFILEANPLRLRGPILPCIDPHSSGVHHSDSEYQRMTI
ASILQRLSVMPETLETTIKVVLGFIKEDQFYYTTCPLQFNGKECKKKCSKLGDNLWLCPR
CQTQIPECNYKYLLQMKLQDQTSSLWANAFDEVGTQLLALSAKELYMLQYDLTIEKTPRS
ILNKVMFTHYNFTVLVSTYTYNSERRLKVTINKVQRLDFEVECNYLLAEISRMGATT
NT seq
1254 nt
NT seq
+upstream
nt +downstream
nt
atgcaccaatataatacgataaaatgcaatggtcaagtctttagtttcgatattgtagac
gaagagggttgtgaagttagaattacttgctttgatgaaatagcagaattgcactatcac
cgagttgaaaaaggagcttggtatgttgttttcaaagattctgtaaaagatgcaagcaca
gtatacaataagcttaacaaccacctagagattatcttgactgaaacttctgttttgaaa
cggtgtgcctctgatgttgctgaaacagaaaaaaaattacaattcaaccctattaataaa
gttctcaccactagcaacaatactttggttgatgttatcggtgttgttgtcaatttcgaa
gagattttagtaattcgtagaaaggatggttctactgtaaagaagagaatagtaaaaata
aatgatatgtcaactttcacaattgatgttaacctttggcgaccaccatcggaacagtta
ggcaatgacttgaagaatatgcatgcatctggaacatttgtcatccttgctattcaaaat
gaaagggttggttatttcaatggaaaattcattaatatctcagcctcaatgactttcgaa
attaaccctttcattcttgaagcaaaccccctccgtttgagaggccctatactgccatgc
attgatccgcactcttcgggtgtccatcatagtgatagcgaatatcaaagaatgacaatt
gcatccatccttcaacgtcttagcgttatgccagaaacccttgagactactattaaagtt
gtcttgggattcataaaagaagaccagttttattatacaacttgcccattgcagttcaat
ggtaaagaatgtaaaaagaaatgtagtaaattaggcgataatttgtggctatgccctagg
tgtcaaacacaaatccctgaatgtaattacaaataccttctacagatgaaactacaagat
caaacaagcagcctttgggctaatgcatttgatgaggttggcacacaactcttggctcta
tctgcaaaggaactctacatgttgcaatatgatttgacaatagaaaaaacacctcgcagt
atacttaataaagttatgttcacccactacaactttacagttcttgtgtctacttacaca
tacaactctgagcgtagattaaaagtaacaattaacaaagtgcagaggcttgattttgaa
gttgagtgcaactatctacttgcagagatttctcgaatgggcgcaaccacatga
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