Cryptomeria japonica (Japanese cedar): 131860029
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Entry
131860029 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131860029
03420 Nucleotide excision repair
131860029
03430 Mismatch repair
131860029
03440 Homologous recombination
131860029
03460 Fanconi anemia pathway
131860029
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131860029
03032 DNA replication proteins [BR:
cjf03032
]
131860029
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131860029
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131860029
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131860029
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131860029
MMR (mismatch excision repair)
131860029
DSBR (double strand breaks repair)
HR (homologous recombination)
131860029
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
REPA_OB_2
Rep-A_N
Rep_fac-A_C
tRNA_anti-codon
Helitron_like_N
DUF223
CDC24_OB3
REP_ORF2-G2P
Motif
Other DBs
NCBI-GeneID:
131860029
NCBI-ProteinID:
XP_059070358
LinkDB
All DBs
Position
11:complement(68359900..68381882)
Genome browser
AA seq
733 aa
AA seq
DB search
MASSAATSESIDHSTIDNLGKNQEYVPTPFAIQSINAGDDLPSALLQVLSFQKMQNTTDD
TDRHKLVLSDGKYMQLAILPSKYATLIDSHILKIGTLIQLSSYTCRYIWNTRTIVILSLE
VKQSVCPFFGKPKYLFKEQQPEIMSEDRPSTSKRLLQFATELPSPQTTTFENISPIKTLN
PYQNKWTIKGKVTHKRHIKANSTATKNGHVFSFDIVDCDGSEIRITCFDEIAKLHYNRVD
IGSHYIISKGSVKEANARYNKLNSHLKITLPNTSIVKRYTNEEQAHQQTAPFTPIGELFQ
LTNNTLVDIIGLVLYVGDIIPIHRKDGSQTQKHVVKINDLSGSTIDINLWGPLVEQKGLE
LKNMLTNDSVVILAFRNACVGYFNGKLVNITAATTLHINPSFPEAELLTSRGRNPLLTVP
FVAKTIHIEDKYTRMTISLIHEQMSIKPETIQTTLLAILRYVNVNDQNFYYTACPLIVNG
RPCKKKCTQQADDSWFCSRCQMSMQDYNYSYLLPLKLQDATALYLHLRFQIFRDEVIVKE
LKAIDHWDRYEWQHRGSAHIHGFLWLPHAPKVDNLDWSDPANIQSVKHFFDQYITTWNPR
SAEAHLNRQYMPAISDPCLADTEIISKIDPCSDYTELLNFVQWHTKCSKSTCLRKKNSIL
QCRYKAPWLEQPDSSLVLDQSNNPSYKPARIDTHLNVRNPTMFAIWRANVDCQPVCSKKA
ILQYISKYASKIE
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggcatcttcagcagctacctctgaatccatagaccattccactattgataatttggga
aaaaaccaagagtatgtccctaccccttttgcaatccaatctatcaatgctggggatgac
cttccttcagcattgctacaagttttgtcatttcagaaaatgcagaacaccacagatgat
actgacagacataaattagtattatctgatggcaaatacatgcagttggcaatcttgcct
tctaaatatgctactctgatagattcacatattctaaaaataggcacactcatccagtta
tcaagctatacatgtcgatacatatggaacacaaggactattgtaatacttagtctggaa
gtgaaacaaagtgtttgcccattctttggaaaaccaaaatatctattcaaagaacaacaa
ccagaaattatgtctgaggacagaccatcaacatctaaacggttgcttcagtttgcaact
gaattgccatccccacaaacaacaacttttgaaaatataagtcctataaaaactttgaat
ccataccaaaataaatggacaatcaaagggaaagttactcataaacggcatattaaggca
aatagcacagccaccaaaaatggccatgtctttagctttgacattgttgattgtgatggt
tctgaaattagaattacatgttttgatgagatagctaagttacactataaccgtgtggac
ataggttcacattatattatttcaaaaggatctgttaaggaggcaaatgcaaggtacaac
aaactaaacagtcatttaaaaatcaccttgcctaatacatccatagtaaaacgctacacc
aatgaagaacaagcacatcaacaaactgctcctttcacacctattggtgaattgtttcaa
ctaacaaacaatacactggttgacattattggtcttgttctatatgttggagatatcatt
cctattcacaggaaagatggcagtcaaacacaaaaacatgttgtgaaaattaatgatcta
tctggttcaacaattgacatcaacttatggggcccattagtagaacaaaagggcttggaa
ttgaaaaatatgttgaccaatgatagtgtggtaatccttgctttccgtaatgcttgtgtt
ggctatttcaatggtaagcttgtgaacataacagctgcaacaacattacatatcaatcca
agtttcccagaagcagagcttctaacatcaagaggaaggaaccctttgcttactgtaccc
tttgttgcaaaaactatccacatagaagacaaatatactagaatgacaatctctttgatc
catgagcagatgagcatcaaaccagaaacaattcagacaacattgctagctattctacgc
tatgtcaatgtcaatgaccaaaatttctattacacagcttgcccactgatagtcaatgga
aggccttgcaagaaaaaatgtacacagcaagctgatgattcttggttctgctctagatgt
caaatgagtatgcaagactataattatagttacctcttgcctctaaagttgcaagatgcc
acagctttgtacttacacttaagatttcaaatctttcgagatgaagtgattgtcaaagaa
ctgaaagctattgaccactgggacagatatgaatggcaacaccgaggatcagcacatata
catggcttcctttggttaccacatgcaccaaaggttgataaccttgactggtcagatcct
gcaaatatccagtcagttaaacacttctttgatcagtacatcacaacatggaatccacgt
tctgcagaagctcacttgaataggcaatatatgcctgcaatttcagatccatgccttgca
gatacagagatcatatccaagatagatccttgtagtgattacactgaattgctcaatttt
gttcaatggcatacgaaatgttcaaagtctacttgcttgaggaaaaaaaactcaatcctt
caatgccgatacaaagctccttggcttgaacaacctgactcctcactagtattagaccaa
agcaataacccatcctataaaccagcaagaattgatacccacctaaatgtacgtaatcct
acaatgttcgccatatggagagcaaatgttgattgccagcctgtctgttccaaaaaagca
attctacaatatatttcaaagtatgcatcaaaaattgaataa
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