Cryptomeria japonica (Japanese cedar): 131860185
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Entry
131860185 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131860185
03420 Nucleotide excision repair
131860185
03430 Mismatch repair
131860185
03440 Homologous recombination
131860185
03460 Fanconi anemia pathway
131860185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131860185
03032 DNA replication proteins [BR:
cjf03032
]
131860185
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131860185
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131860185
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131860185
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131860185
MMR (mismatch excision repair)
131860185
DSBR (double strand breaks repair)
HR (homologous recombination)
131860185
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
zf-4CXXC_R1
CDC24_OB3
zf-RRPl_C4
Motif
Other DBs
NCBI-GeneID:
131860185
NCBI-ProteinID:
XP_059070547
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All DBs
Position
11:complement(297764775..297776409)
Genome browser
AA seq
463 aa
AA seq
DB search
MTTFSLQGTGIVIEFSHNVGYSRRVRFSSSFECFVELVSELHVVHGFTLQGLVLCLCYLT
VSRRDYFQSASHRVTYFDEIAQLHSNRVDIGSHYIISKGSIKEANVRYNKLNSHLEIILF
DESILKRCTNEEQADQQRPLFTPISELFHLTNNTLVDIIGLVLYIGDIIPTRRKDGSQTQ
KRIVKINDLSGSTIDINLWGPMVEQKGLELKNMLTNDSVVILALRNARVGYFNGKLINIT
AATTLHINPPFPKAEPLTLRGNDPLLIVPLVAETIHIDEKYTRMTISSICERMSVKPETI
QTTLLVVLRFVNVTDQSFCYAAYPLIVNGRPCKKKSTQQLDDSWFCPRCEMTMQDCNYSY
LLPLKLQDATGTLWATAFDEGGIHLLHKTAKELCALQNDATTIETPCSVIKRLLPHHYSF
TLLVSTDTYNSESKMKVTINKVSLVDFKAECDALLAEIGCLST
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgactactttcagtctgcaaggcacaggtatagtcatcgagttttcgcataacgttgga
tatagtcgtcgagttaggttttcttctagctttgagtgttttgttgagcttgtttctgag
cttcacgtcgtacatggttttaccttgcaagggttggtactttgtttatgttatttaact
gtttctagacgtgactactttcagtctgcaagtcacagagtcacatattttgatgaaata
gctcaattacactctaaccgtgtggacataggttcacattatattatttcaaagggatcc
attaaggaagcaaacgtgaggtacaacaaactaaatagtcatttagaaatcatcttgttt
gatgaatccatactaaaacgctgcaccaacgaagaacaagctgaccaacaacgccctctt
ttcacgcccattagtgaattgtttcatctaacaaataacacattggttgacataattggc
cttgttttatacattggagatatcattccaacacggaggaaagatggcagtcaaacacaa
aagcgtattgtgaaaattaatgatctatctggttcaacaattgacatcaacctatggggt
ccaatggtagaacaaaaaggcctagaattgaaaaatatgttaaccaatgatagtgtggtt
atccttgctttgcgtaatgctcgtgttggctatttcaatgggaagcttataaacataaca
gctgcaaccacattacatatcaatccaccttttccaaaagcagaacctctaacattaaga
ggaaatgaccctttgcttattgtacccttggttgcagaaactatccacatagatgagaaa
tatactagaatgactatttcttcaatctgtgagaggatgagtgtcaaaccagaaacaatt
cagactactttgctagttgttttgcgttttgtaaatgtaactgatcaaagtttctgttac
gcagcttatccattgatagtcaatggaaggccttgcaaaaaaaaaagtacacaacaactt
gatgattcttggttctgtcctagatgtgaaatgactatgcaagactgtaattatagttac
ctcttgccactaaagttacaagatgccacgggtactctttgggccactgcatttgatgag
ggtggcattcatttgctacacaaaactgcaaaagagctttgtgcactacaaaatgatgca
acaacaatagaaacaccttgttcagtgattaaaagactactgccacatcactattcattc
acactgttggtatccactgacacatataattcagaatcaaagatgaaagtcacaatcaat
aaagtctctcttgttgacttcaaagctgagtgtgatgcactacttgcagaaattggttgc
ctaagtacatag
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