Cryptomeria japonica (Japanese cedar): 131860261
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Entry
131860261 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131860261
03420 Nucleotide excision repair
131860261
03430 Mismatch repair
131860261
03440 Homologous recombination
131860261
03460 Fanconi anemia pathway
131860261
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131860261
03032 DNA replication proteins [BR:
cjf03032
]
131860261
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131860261
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131860261
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131860261
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131860261
MMR (mismatch excision repair)
131860261
DSBR (double strand breaks repair)
HR (homologous recombination)
131860261
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
REPA_OB_2
Rep_fac-A_C
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
Motif
Other DBs
NCBI-GeneID:
131860261
NCBI-ProteinID:
XP_059070628
LinkDB
All DBs
Position
11:483993854..483997086
Genome browser
AA seq
454 aa
AA seq
DB search
MASASQSAEPTQQVSAETTDMDPEIQLTPHAIVSINAGDDVPSPILQLLSFEKLIDNKDD
NAWYRLVLSDGTHMQLSILPPKYSELLLSDTLKIGYVLSLIAYACRTVWNLRFIIIFKLV
VKFTNSPLLGKPRYFLKEKEQEMFARDPALAARCSLKFGIHVPPAQQETFHNISLIKALI
PFQNKWAIKGRVINKRKMHQYNTPKSSGQVFNFDMIDAEGTEIRIMCFGDIAKMHYHSVE
PEAYYYLSKGSIKEANTKWNKVNSHLEITLDQKSILKRCDPPVDGEGNASQFTPINELTN
CSNNTLVDVIGVVIDVKDLAVISRKDGTKVKKMVVKINDMSTFIVDVNLWGVAWEQLGED
LKNMHVAQTIVVLQVTNARVGYFNEKIILQDHTGSLWGTAFDEVGTNLLGMSAKELYMLQ
YDLAANRTPQSIIKNVLLSTFVFTLSVTTENYNS
NT seq
1365 nt
NT seq
+upstream
nt +downstream
nt
atggcttccgcctcccagtcagctgagcccacacaacaggtttctgcagaaactacggat
atggacccagaaatacaactaaccccacatgcaatcgtctccattaatgccggcgatgac
gtcccatctccaatacttcagcttttgtcttttgaaaaattgatagacaataaggatgac
aatgcttggtataggctcgttttatctgatggtacacacatgcaattgtcaatcctgcca
ccaaagtatagtgaactactgctttcagacacattaaagataggttatgtgctatcattg
atagcttatgcttgtagaactgtttggaacttgaggtttataataatattcaagcttgtt
gtcaaatttacaaattcaccattgctcggaaaacctagatactttcttaaagagaaagaa
caagaaatgttcgctcgcgatccagctctcgcagctagatgttcccttaagtttgggata
catgtcccacctgcacagcaagaaacctttcataatatcagcctgataaaagctttgatt
cccttccaaaataaatgggcaataaaaggtcgtgtaataaacaagaggaaaatgcatcag
tataatacaccaaaatcctctgggcaagtgtttaactttgacatgatagatgctgaaggt
actgaaattagaataatgtgttttggtgatatagctaagatgcattatcatagtgttgaa
ccagaagcatattattatctgtcgaaaggttccattaaggaagccaacacaaaatggaat
aaagttaacagtcatcttgagattactttggaccaaaaatcaatattaaagcgttgtgat
ccgcctgttgatggtgaaggcaatgcttctcaattcacaccaatcaatgaacttacaaac
tgcagcaacaacactttagtcgatgtcattggtgttgtcattgatgttaaagaccttgcc
gtaatatctagaaaagatggaaccaaagtgaaaaaaatggttgttaaaataaatgatatg
tcgacttttattgttgatgttaatttatggggggtggcttgggaacaattaggtgaagat
ctcaagaatatgcatgtagctcaaacaattgtcgtccttcaggtcactaatgctcgtgtt
ggctatttcaatgaaaagatcattcttcaagaccatacaggctctctttggggtactgcc
tttgatgaagttggcacaaatttgctaggcatgtcagccaaagaactttacatgttgcag
tacgatttggccgcaaacagaactcctcaatctattatcaagaatgtcctcttatccacc
tttgttttcactctctctgttacgacagagaactacaactcatag
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