KEGG   Cryptomeria japonica (Japanese cedar): 131860374
Entry
131860374         CDS       T10556                                 
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
  KO
K07466  replication factor A1
Organism
cjf  Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030  DNA replication
cjf03420  Nucleotide excision repair
cjf03430  Mismatch repair
cjf03440  Homologous recombination
cjf03460  Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:cjf00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    131860374
   03420 Nucleotide excision repair
    131860374
   03430 Mismatch repair
    131860374
   03440 Homologous recombination
    131860374
   03460 Fanconi anemia pathway
    131860374
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:cjf03000]
    131860374
   03032 DNA replication proteins [BR:cjf03032]
    131860374
   03400 DNA repair and recombination proteins [BR:cjf03400]
    131860374
Transcription factors [BR:cjf03000]
 Eukaryotic type
  Zinc finger
   Cys2His2 others
    131860374
DNA replication proteins [BR:cjf03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RPA (replication protein A)
    131860374
DNA repair and recombination proteins [BR:cjf03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    RPA (replication factor A)
     131860374
   MMR (mismatch excision repair)
     131860374
  DSBR (double strand breaks repair)
   HR (homologous recombination)
     131860374
SSDB
Motif
Pfam: REPA_OB_2 tRNA_anti-codon DUF223 SH3_Rv0428c
Other DBs
NCBI-GeneID: 131860374
NCBI-ProteinID: XP_059070761
LinkDB
Position
11:complement(638623312..638624334)
AA seq 340 aa
MLGRETPPSTKHALKFGADLPYPQNGPSENISPIKSLNPYQNNWTIKGRITNKRKMHQYN
TPKCNGQVFSFNIIDEEGCEIRITSFEEIAELYYHRVEKGASYIISKGTVKDANTVYNKL
NSHLEIILTETSVLKRYAPNVVETEKKTRFTPINEVLTTTNNTLVDVIGVVVNVGEISII
RRKDGSTVNKRIVKINDMSTLTIDVNLWCPPSEQLGSDLKNMHTSGTFVILVVQNARVGY
FNRKFINISASTTFEINPSIPEVDPLRLRGIVQQCLDPHSSAIHSKINQYQRMSIASILQ
CLNIVPETIETTITVVLRFIKEDHFYYTACPLQLPITVQW
NT seq 1023 nt   +upstreamnt  +downstreamnt
atgttgggccgagaaaccccaccctccactaaacatgctcttaaattcggtgcagatttg
ccttacccacaaaatggtccctctgaaaatatcagccctattaaaagcttgaacccttac
caaaacaactggaccataaaaggccgcataacaaataagaggaagatgcatcaatataac
acgccaaagtgcaatggccaggtttttagtttcaatattatagacgaagagggttgtgaa
attagaatcacttcctttgaagaaattgcagaattgtactatcatcgagttgaaaaagga
gcttcatatattatttccaaaggtactgtaaaagatgcaaacacggtatacaataagctt
aacagccaccttgagattatcttgactgaaacttcagttttgaagcgatatgcccctaat
gttgttgagactgaaaaaaaaacacgcttcacccctattaatgaagttctcaccactacc
aacaatactttggttgatgttattggtgttgttgtcaatgtcggagagatttctataatt
cgtagaaaggatggctctactgtaaacaagagaatagtaaaaataaatgatatgtcaact
ttgacaatagatgttaacctttggtgcccgccatctgaacaactaggcagtgacttgaag
aatatgcatacatctggaacatttgtcatccttgttgttcaaaatgcaagggttggttat
ttcaatcgaaaattcattaatatttcagcatctacaacttttgaaattaacccttctatt
cctgaagtagacccactccgtttaagaggcattgtacaacaatgccttgatccacactct
tcagctatccatagcaaaattaaccagtatcaaagaatgtcaattgcatccatcctacaa
tgtcttaacattgtgccagaaaccattgagactactattacagttgtcttgcgcttcata
aaggaagaccacttttactatacagcttgcccattacagttgcccattacagttcaatgg
taa

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