Cryptomeria japonica (Japanese cedar): 131870327
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Entry
131870327 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit E-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131870327
03420 Nucleotide excision repair
131870327
03430 Mismatch repair
131870327
03440 Homologous recombination
131870327
03460 Fanconi anemia pathway
131870327
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131870327
03032 DNA replication proteins [BR:
cjf03032
]
131870327
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131870327
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131870327
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131870327
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131870327
MMR (mismatch excision repair)
131870327
DSBR (double strand breaks repair)
HR (homologous recombination)
131870327
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
tRNA_anti-codon
DUF223
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
131870327
NCBI-ProteinID:
XP_059071827
LinkDB
All DBs
Position
Unknown
AA seq
498 aa
AA seq
DB search
MATLTTNAIADILAGMSLVDPSLQVTAIHSIQQPHSTNVKFRVQLSDAIIGSPTPLLQAI
AYLPSNSYEDPLNPFPIIPIKTLTPYHKQWSIEGRALAKTPIHEFKNAGHDGKFFGFDFV
DMLGYEIHVTCFNELVDSFYNVIHFGSLYVLSNGRIKVANTKYSSSTNPFEIILHNSSAI
SHSTCIDSTIPKHSFHIKSIDSLQSFPINSLVDVIGIVLSISPTSTICKRDGTKTIKSTA
TIIDMSSCTIDITFWGRHCQIEGKEIFEMSLEPNPPVLLIKSGRIISWNGKSLDTIFSTI
LLINLDLLETTTLQTWYAKKGLDEPYISLSQSNLSPHKFDKSIDISSITDESFPEKKNVF
VKATITKFHLDNFYYLSCPQVVDKKKCKKKVVQSSANTFQCPKCSTDLSECDFSYMLKMD
LQDETGELLKVTAFEGPSNTLSGVGAEDFQLLLAKPDAVEPILSNVIDCQFLFDLNIKMV
PFDGHETQSIVITAIKPT
NT seq
1497 nt
NT seq
+upstream
nt +downstream
nt
atggcaacattaactacaaatgccatagcagacatccttgcaggcatgtctcttgttgac
ccttctttacaagttacggcaatacattccattcaacaacctcattctacaaatgtcaaa
ttccgagtacaactctctgatgcaatcattggatctccaactccactcctacaagctatt
gcctaccttccatcaaatagttatgaagacccattgaaccctttcccaattattccaatt
aaaacattgaccccatatcacaaacaatggtccattgaaggtcgagcattagcaaaaacc
cctattcacgaattcaaaaatgcaggtcatgacgggaaattttttggatttgattttgta
gacatgttaggttatgaaatacatgtgacttgttttaatgaacttgttgatagcttttac
aatgttattcactttggtagtctttatgtgctctccaacggtcgtattaaagtggcaaac
acaaaatatagttcctccacaaacccttttgaaataatcctccacaactcttctgcaata
agtcattccacatgcatagactctaccatacccaagcatagcttccacattaagagcata
gattccctacagtcatttcctattaattcccttgtagatgtcattggaatagttttatcc
atctcacctacttcaaccatatgtaaaagggatggcactaagacaataaagagtactgcc
acaatcatagacatgtcaagttgtaccatagatattacattttggggtcgccactgtcaa
attgagggaaaagaaatatttgaaatgtccctagaaccgaatcctcctgttcttttgatc
aagtctggtcgtataatatcttggaatggaaaatcacttgatactatcttttcaactata
cttttgatcaatctagatttgttggagaccacaacattacaaacatggtatgccaagaaa
gggcttgacgaaccctacatttcattgtcacaaagcaacctttcccctcacaaatttgat
aaatcaatagatatttcatctattactgatgaaagctttcctgaaaaaaaaaatgtattt
gtgaaggccactattacaaaatttcacttggacaacttttactacctttcttgtccacaa
gtcgtggacaaaaaaaaatgtaagaaaaaagttgtgcaaagctcagccaacacattccaa
tgcccaaagtgttctactgatctctctgaatgcgattttagctacatgcttaaaatggac
ttgcaagatgaaacgggtgaacttcttaaagttaccgcattcgaaggaccatcaaatacc
ttgtcaggtgttggtgcagaagattttcagcttcttctggcaaaacctgatgctgtggaa
cctatattgagcaatgttattgattgtcaatttttatttgatctcaacatcaaaatggtt
ccatttgatggccacgaaacacaaagcattgttattacagccattaagcctacctaa
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