Cryptomeria japonica (Japanese cedar): 131874454
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Entry
131874454 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131874454
03420 Nucleotide excision repair
131874454
03430 Mismatch repair
131874454
03440 Homologous recombination
131874454
03460 Fanconi anemia pathway
131874454
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131874454
03032 DNA replication proteins [BR:
cjf03032
]
131874454
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131874454
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131874454
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131874454
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131874454
MMR (mismatch excision repair)
131874454
DSBR (double strand breaks repair)
HR (homologous recombination)
131874454
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
131874454
NCBI-ProteinID:
XP_059073819
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All DBs
Position
3:complement(983887106..983889040)
Genome browser
AA seq
537 aa
AA seq
DB search
MDVLTGNAIQLMYDGSVLVAPCLQISAISNFGDGLEHGNRYRVDLSDGIHKQKASLPKKY
NDDIDSKRLMIGSILQLTKYIFLNSHGSRRIVILDLEIICTTHATVVEPIFLCVKQEDVV
VQTTPPLCDASTQPSTSTKYQGFGRQRSLFEVRKPQNVGSIPTTITPIKNLNPYQPNWSI
KGRVLVNKDIYHYNTTKASGDVFSFDIVDREGIETHVTCFNELAKTHYDNIQVGVAYKLS
GGAIKLANKIYNKLNNGLEITLVDDSKVTACNDDSSIPKHRYAFIALDQVATINNNSTID
VIGIVISVDLSSTICKRDGTKVPRRTIKLVDMTRTTIDVTLWGAMAKKEGTTFNTSLTID
PLIEELAQLKDWYSQNVHTEQGIFHQLVAPAPAPQRMTISEIQAHASNSEQPFYCILKAT
IQQIKSKSFFYQACPTQDHTDTIWEIVFDEGAIELMGMPAKTLYMLQSDDNAEQSTADVI
KNVTYNQFLLNLTCRNETYNNEEWLKVAITNAKQLDFASENSILLEKIKEMFTDTSL
NT seq
1614 nt
NT seq
+upstream
nt +downstream
nt
atggatgtactaactggaaatgctatccagcttatgtatgatgggtccgtccttgtggct
ccatgtctccaaatatctgctatatctaactttggggatggacttgagcatggcaatcgt
tatagagttgatctttcagatggcattcacaaacaaaaggcatccttgccaaaaaaatat
aatgatgacatagattccaaacgactcatgattggctccattctacagctaacaaaatat
atctttctaaattcgcatggctcccggcggattgttattctagacttagagattatatgt
acaacacatgctacagttgtagaaccaattttcctttgtgtaaaacaggaagacgttgta
gtacaaactacgcctcctctatgtgatgcaagtactcagccaagcacatccacaaaatat
cagggttttgggcgacagagatcattgtttgaggtcaggaaacctcaaaacgtgggtagc
atacctacaacgataactcccataaaaaatttgaatccctaccaaccaaactggtccatc
aagggtcgtgtcctagtgaataaggacatctatcactataatacaacaaaagcaagtggt
gatgtttttagctttgacattgtagacagagaaggtattgaaacacatgttacgtgtttc
aatgaacttgcaaaaacccattatgataatatccaagttggagtggcatacaaattatct
gggggagcaatcaagttagccaataaaatttacaacaaactcaacaatggactagaaata
accttggtagatgattcaaaggttactgcctgcaatgatgactcttctatacccaagcat
agatacgccttcatagctcttgatcaagtggctactataaataacaactcaaccattgac
gttattggaattgtcattagtgttgatctgagctcaacaatatgtaaaagagatggtaca
aaggttcctaggcgtaccattaagttagttgacatgactcgaacaaccatcgatgttaca
ctatggggcgcaatggcaaaaaaggaaggtacaacatttaatacaagcctcaccatagac
cctctaatcgaggaattggcccaactaaaagattggtacagccaaaatgttcacactgaa
caaggaattttccatcaacttgttgcaccagctcctgcccctcaaagaatgacaattagt
gaaattcaggcacatgcatcaaattcagagcaaccgttctattgcattctaaaggcaacg
atacaacagataaaatctaagtcatttttctaccaagcatgtcccacccaagatcacaca
gatacaatatgggaaattgtatttgatgaaggggcaatagaactcatgggcatgcctgca
aaaacattatacatgcttcaatccgatgacaatgctgagcaaagcaccgcagatgtcata
aaaaacgtaacgtataatcaattcctcttgaacctaacatgcagaaatgaaacatacaat
aatgaagaatggctaaaggttgccatcaccaatgcaaagcagctagattttgcctcagag
aacagtatacttctagaaaaaataaaagaaatgtttactgatacaagcctctag
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