Cryptomeria japonica (Japanese cedar): 131874654
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Entry
131874654 CDS
T10556
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
131874654
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
cjf03019
]
131874654
Enzymes [BR:
cjf01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
131874654
Messenger RNA biogenesis [BR:
cjf03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
131874654
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
131874654
NCBI-ProteinID:
XP_059074424
LinkDB
All DBs
Position
3:555111763..555160654
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AA seq
759 aa
AA seq
DB search
MWIQNLSRVSFQTLSKANYFRSSFEYRFPYQWSRLFSSSASAAGLVMANVTRGNFKVALE
GLRGLIRDADFIAIDLEMSGLTSAPWRDSFEFDTLEVRYSKLADSARNFAVLQFGVCPFR
WDSTSAHFFAHPHNFYIFPRNELPANIPPFDFLCQTTSIEFLAKHNFDFNVCIYEGISYL
SKQQEAEVRHKLGLTDVDENKKGNSEISINQLKEIPLISIADVLFSERMKIKFGQWRDTL
LRDQNSGDCATVGGNVEFHEQGCESETSFYKRRPSLLLNGLNSHQSILVKQTLRRYFKDI
VYIETLDKSASVKKQVVFTHSENDRRLLMKQLDEDRHMMLESEVEQAIGFRHVIDLIASA
GKLIVGHNCLLDFAHIHSKFIAPLPETVVEFATSLHKHFPYIIDTKYLLRTEPMLQNMMK
KKSTSLSSAFTHMCGQFACTSDAVNKIMNSTVKVVVPAELQRYTDAHSGAKHEAGYDAYM
TGCIFAQACKHLDIDLNNLHLGSDFALADKFQRYANLLYVGWIRSLVLDLTTGGEAVESR
TMLQSHYLSKLIPAKLVLVWGFQTGYSESDLRGLVKGVLGTVYPVMGVYFLDASSAFIHF
LNEQMAAKFLCLMEAKMEETCNFLSSQSPLTSLLETGSINAIGYDMYEQICKSSMSKLLF
AEQVEALGIRWKISASLTASKNRTKKLNCETNGLRNNQNGGKMEETLQVCPVKYQGETLN
SEKRRERSFSFLSEDGHDFANDTECAPSRDFAKRSRMES
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgtggattcaaaacctttcaagggtttcatttcaaaccctgtcgaaggcaaattatttc
aggtcttcgtttgaatatcggttcccgtaccagtggagcagattatttagcagctctgcg
tcggcggcaggtctagtgatggcgaatgtgacgagaggcaacttcaaggttgctctcgag
ggccttcgcggtcttattagagatgcagattttattgccattgatttggagatgagcggc
cttaccagcgcaccatggcgcgatagttttgaattcgacacgttagaagttcgatactcg
aaactcgccgattccgcccgcaacttcgctgtcctgcagtttggagtttgccctttccgc
tgggactctacctccgctcattttttcgctcacccgcacaatttctacatctttcctcgc
aatgaacttccagccaatattccaccatttgattttctctgccagacaacatctattgag
ttcctggctaagcataactttgattttaatgtttgcatttatgaaggaatatcatattta
tcaaaacagcaagaagctgaagttagacataaactgggcttgacagatgtggatgaaaac
aagaaaggcaattctgaaataagcataaatcaattaaaagagatacctttgattagtatt
gccgatgttctcttttctgaaaggatgaagattaaatttggtcagtggcgtgatactctg
ctaagagaccaaaatagtggagattgtgctacagttggtggaaatgttgaatttcatgag
caaggatgtgaatctgagaccagcttttacaagagacgcccttcccttctgctgaatgga
ttaaattctcaccaaagcatattagtcaagcagacattaagaaggtacttcaaggacatt
gtatacatagaaacacttgataaatctgcatctgtcaaaaaacaagtagtatttacgcat
tctgaaaacgacaggaggctcttaatgaaacagcttgatgaagacagacacatgatgttg
gagtctgaagtggaacaagcaataggctttcggcatgtaattgatttgattgcttctgca
ggaaagcttattgtaggtcacaactgccttttagattttgctcatatccatagcaagttt
attgctcctctgccagaaacagtggttgaatttgcaacatctcttcacaagcattttcca
tatataatcgatactaagtaccttctcagaacagagccaatgttacaaaatatgatgaaa
aagaagagcaccagtttgtcctccgcatttactcacatgtgtgggcagtttgcttgtact
tcagatgctgtcaataaaattatgaattctactgtcaaagttgtggttccagctgaacta
cagaggtacacagatgctcattctggtgcaaagcatgaagctggatatgatgcttacatg
actggatgcatatttgctcaggcttgtaaacatttggacattgacttaaacaatcttcat
cttggatctgattttgctttggcagataaatttcagagatatgccaatctactttatgtt
ggctggatcaggagtttagtgctagacttaacaacaggaggggaagcagtggaatctaga
actatgcttcaaagtcactatctttcaaaactcatacctgctaaactagtccttgtctgg
ggctttcaaactggatatagtgagagtgacttgagaggtctagtgaaaggtgtgctcggc
accgtataccctgttatgggtgtttacttcttggatgcaagttctgcattcatccatttt
cttaatgaacagatggcagctaaatttctttgtttaatggaggctaagatggaagaaacc
tgcaattttttatcatctcagagccctttaacttcactattagaaactggaagcattaat
gctattggatatgatatgtatgaacagatatgcaagtcttcgatgtccaaattgctcttt
gcagagcaggttgaagcattgggaataagatggaagattagtgctagtttaacagcaagt
aaaaatagaacaaaaaaattgaactgtgaaaccaatggtcttagaaataatcaaaatggt
ggcaaaatggaggaaactcttcaagtttgtcctgtaaaatatcaaggagaaacactcaat
agtgagaaaagacgtgaaagatctttttcttttttgtctgaagatggccatgattttgca
aatgatactgagtgtgctcctagccgtgattttgcaaagaggtccagaatggagagctaa
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