Cryptomeria japonica (Japanese cedar): 131875130
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Entry
131875130 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131875130
03420 Nucleotide excision repair
131875130
03430 Mismatch repair
131875130
03440 Homologous recombination
131875130
03460 Fanconi anemia pathway
131875130
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131875130
03032 DNA replication proteins [BR:
cjf03032
]
131875130
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131875130
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131875130
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131875130
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131875130
MMR (mismatch excision repair)
131875130
DSBR (double strand breaks repair)
HR (homologous recombination)
131875130
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Motif
Other DBs
NCBI-GeneID:
131875130
NCBI-ProteinID:
XP_059075141
LinkDB
All DBs
Position
4:353341559..353342641
Genome browser
AA seq
360 aa
AA seq
DB search
MRYNKLNSHLEIILSDTTILKHCSNKEQADQQHSPFTPISELFHLTNNTLVDIIGLVLYI
GDIIPIHRKDGCQTQKRVVKINDLSRSTIDINLWGPMTEQKGLELKNMLTNDSVVILALC
NARVGYFNGKLVNITAATTLHINPPFPEADSLTLSGKDPLLGVPFVPKTIHIDGKYSRMT
ISSIRERMSIKPETIQTTLLVVLHFVNVTDKSFYYAACPLIVNGRPCKKKCTQQADDSWF
CPRCDMTMQDCNYSYLFPVKLQDAIGTLWATAFDDVGIHLLHKIAKELCALENDATTTET
PCSVIKRLLSHHYSFTLLVSTDTYNLESKMKVTVNKVSPVDFKAKCDALLAEIGRLSTQA
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atgaggtacaacaaactaaacagtcatttagaaatcatcttatctgatacaaccatacta
aaacattgcagcaacaaagaacaagcagatcaacaacattctcctttcacgcccattagt
gaattgtttcatctaaccaataacacgttggttgacataattggtcttgttttatacatt
ggagatatcattccaatacacaggaaagatggctgtcaaacacaaaagcgagttgtcaaa
attaatgatctgtctagatcaacaattgacatcaacctatggggtccaatgacagaacaa
aaaggcctagaattgaaaaacatgttgaccaatgatagtgtggttatccttgctttgtgt
aatgctcgtgttggctacttcaatggaaagcttgtaaacataacagctgccaccacatta
catatcaacccaccttttccagaggcagattctctaacattaagcggaaaggaccctttg
cttggtgtaccctttgttccaaaaactatccacatagatgggaaatatagtagaatgact
atttcttcaatccgtgagaggatgagtatcaaaccagaaacaattcagactactttgctg
gttgttctgcattttgtaaatgtaactgataaaagtttctattacgcagcttgtccacta
atagtcaatggaaggccttgcaaaaaaaaatgtacgcagcaagctgatgattcttggttc
tgccctagatgtgacatgactatgcaagactgcaactatagttacctctttccagtaaag
ttacaagatgccataggtactctctgggccactgcatttgatgacgttggcattcacttg
ctacacaaaattgcaaaagagctttgtgcactggaaaatgatgcaacaacaacagaaaca
ccttgctcagtgattaaaaggcttctgtcacatcactattcattcacactcctggtgtcc
actgacacatacaatttggaatcaaagatgaaagtcacagtcaataaagtctctcctgtt
gacttcaaagctaagtgtgatgcactacttgcagaaattggtcgcctaagtacacaagct
tag
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