Cryptomeria japonica (Japanese cedar): 131875390
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Entry
131875390 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit C-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131875390
03420 Nucleotide excision repair
131875390
03430 Mismatch repair
131875390
03440 Homologous recombination
131875390
03460 Fanconi anemia pathway
131875390
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131875390
03032 DNA replication proteins [BR:
cjf03032
]
131875390
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131875390
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131875390
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131875390
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131875390
MMR (mismatch excision repair)
131875390
DSBR (double strand breaks repair)
HR (homologous recombination)
131875390
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
REPA_OB_2
Rep_fac-A_C
Rep-A_N
tRNA_anti-codon
OB_MEIOB_N
Beta-prop_TEP1_2nd
DUF223
Motif
Other DBs
NCBI-GeneID:
131875390
NCBI-ProteinID:
XP_059075485
LinkDB
All DBs
Position
4:complement(777606481..777608817)
Genome browser
AA seq
556 aa
AA seq
DB search
MASPAASQQPSTETSEVELHLQLTPHALLCINARDDVPSPVLQLLSFEKLIDDENDNARY
KVVLSDATHMQLAILPPKYSGLLLLETLKIGTILSLTAYACRNVWNSRTIIIFSLAVKFT
NSPLLGKPRYLFKEQEQQMLGRDTPATTKRSLKFGIHLPPVQHESSVNISPIKALNPFQN
KWTIKGRVTNKRKMHQYSTPKSTGQVFSFDMIDGEGTEIRITCFGDVAEMHYHRVEPGTY
YTVSKGCVKEANTKWNKLNSHLEITLDNNSILKHCDDVVESEANNSQFTPINEITYCTNN
TLVDVIGIVVAVGEPSLIRRKDGSEVTKRIVKINDASTFTIDVNLWGETWQGLGEDLKSM
HTTQTAVVLAVRNARVGYFNGKVVNTTTATTLNINPSIPETETLMSRGKISNALLPLSCV
AGQLNSQYSRMTIIAVLERTSVLSETVESTIRAVMKLQDHTGALWATAFDEVGTNILQIS
AKELYMLQYDLTTQKTPQSIIKHVLLSSFVFTLSITTDMYNLEPRLKATITKVARIDYQA
ESALLLAEIAQMTTTA
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcctctcctgctgcctcgcaacaaccttctacagaaacttcggaagtggaactacat
ctacaattgactccacatgcactgctctgcatcaacgctagggatgatgtcccctctcca
gtgcttcagcttttgtcttttgaaaaattgatagacgatgaaaatgacaatgcccggtat
aaggttgttttgtctgatgccacacacatgcaattggcgatcctcccacctaagtatagt
ggtttgctgcttttagagacattaaagattggcactatcctatcattgacagcttatgct
tgtagaaatgtttggaactcaaggactataataatattcagccttgctgtcaaatttacc
aattctccattgcttgggaaacctagatatctgtttaaagagcaagaacaacaaatgttg
ggtcgagacacacctgccacaactaaacgatcccttaaatttggaattcacctcccacct
gtgcagcatgaatcttctgttaatatcagcccgattaaagccttgaaccccttccaaaat
aaatggacaataaaggggcgtgtgacaaacaagaggaagatgcatcaatatagtacacca
aagtccactggccaagtatttagctttgacatgatagatggtgaaggtactgaaattaga
ataacttgctttggcgatgtagcagaaatgcattatcatagggttgaaccaggaacatat
tatactgtgtcaaaaggttgcgttaaagaagctaacactaaatggaataagcttaacagc
catcttgagataactttggacaacaattcaatattgaagcattgtgatgatgttgttgaa
agtgaagcaaataattctcaattcacaccaatcaatgaaattacatactgcaccaacaac
actttagttgatgttattggtattgtagttgctgttggagaaccctcattaattcgcagg
aaggatggaagcgaagtaacaaagagaattgtaaaaataaatgatgcctcaacttttact
attgatgttaacttatggggagaaacatggcaagggctaggtgaagatttgaagagcatg
cacacaacccaaacagctgttgtccttgcagtcagaaatgctcgtgttggttatttcaat
ggaaaggtggtcaacacaaccacagcaacaactctaaatataaacccttctatacctgaa
acagagacacttatgtcaagaggaaagatttcaaatgcccttttaccgctatcgtgtgtt
gctggccagcttaactcacaatacagtaggatgacaatcatagctgttttagagcgtaca
agtgttctctctgaaacagttgaaagtactattagggctgttatgaagctccaagatcat
acaggggctctttgggctactgcctttgatgaggttggcacaaatatactgcaaatatct
gccaaggagctttacatgctgcagtacgatttgactacacaaaaaacacctcagtccatt
atcaagcatgtccttttgtcttcctttgttttcacactctctattacaacagacatgtac
aatttagaacccaggctcaaagcaacgataaccaaagttgccagaattgattaccaggct
gaaagtgctcttctgcttgcagagattgctcagatgactacaactgcatag
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