Cryptomeria japonica (Japanese cedar): 131875713
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Entry
131875713 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131875713
03420 Nucleotide excision repair
131875713
03430 Mismatch repair
131875713
03440 Homologous recombination
131875713
03460 Fanconi anemia pathway
131875713
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131875713
03032 DNA replication proteins [BR:
cjf03032
]
131875713
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131875713
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131875713
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131875713
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131875713
MMR (mismatch excision repair)
131875713
DSBR (double strand breaks repair)
HR (homologous recombination)
131875713
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
CDC24_OB3
Motif
Other DBs
NCBI-GeneID:
131875713
NCBI-ProteinID:
XP_059076322
LinkDB
All DBs
Position
5:complement(67965215..67966195)
Genome browser
AA seq
326 aa
AA seq
DB search
MIDGDGTEIRITCFNETAKLHHQSVQVGASYFISKALFKEENTRYNKLNSRLEINLDQGS
ILKCCDDRIVPPNKVSNFTPISEIANYSNYTLVSIIGILVDIGNTAVFQRKYATQVMRRT
LKINDISNFSIDVNLWGDVWQTIGDDLQKKHCSGELIIISIINGYVGYFNGKVISSIGGI
VLNVNPSIPEAQPLIARGELTSHVVLFPSTPGQLNTPYTRKTLAFVLEQCTILTDVVETV
IRETIQFIKPNAFCYPACPLTVYGKECKKKCIQQKTNEWFCPRCQEKVPKCTYRYVLQVK
IYDHTDNMWVTIFDEVASKILQISTK
NT seq
981 nt
NT seq
+upstream
nt +downstream
nt
atgattgacggcgacggaacggagatcagaattacttgcttcaatgaaactgcaaagttg
caccatcaaagtgttcaagttggagcgtcctactttatctcgaaagccttgtttaaagaa
gaaaacacaaggtacaacaagctaaacagtcgcctagaaattaatttggaccaaggttca
attttgaaatgttgtgatgatagaattgtaccacctaacaaggtttcaaactttacacca
ataagtgagattgccaattatagtaactacactttggttagtataattggcattttagtt
gatattggaaacaccgcagtgttccaaagaaaatatgccacacaagtaatgcgtagaact
ttgaagattaatgacatatctaatttttctattgatgtgaacctttggggtgatgtgtgg
caaactataggtgacgatctacaaaaaaaacattgtagtggagagttgattatcatttct
attataaatggttatgtgggttactttaatggcaaagtcattagcagcattggtgggata
gtattgaatgttaatccctccatcccagaagcgcagccgcttatagctagaggggaatta
acatctcatgttgtcctttttccctctacgcctggacaactcaatacgccatatacgaga
aaaacactggcctttgttttagagcaatgcactattcttacagatgttgtggaaacggtt
attagagaaaccattcagtttatcaaacctaatgctttttgctatcctgcttgccccctg
acagtgtatggaaaagagtgcaagaaaaaatgtatacaacaaaagaccaatgaatggttt
tgtcctagatgtcaagagaaagtaccaaaatgtacttatcgatatgtattgcaggtgaag
atttatgaccatactgacaacatgtgggttactatttttgatgaagtggcatcaaaaata
ttacagatctcaacaaaataa
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