Cryptomeria japonica (Japanese cedar): 131875722
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Entry
131875722 CDS
T10556
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A-like
KO
K07466
replication factor A1
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03030
DNA replication
cjf03420
Nucleotide excision repair
cjf03430
Mismatch repair
cjf03440
Homologous recombination
cjf03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
131875722
03420 Nucleotide excision repair
131875722
03430 Mismatch repair
131875722
03440 Homologous recombination
131875722
03460 Fanconi anemia pathway
131875722
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
cjf03000
]
131875722
03032 DNA replication proteins [BR:
cjf03032
]
131875722
03400 DNA repair and recombination proteins [BR:
cjf03400
]
131875722
Transcription factors [BR:
cjf03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
131875722
DNA replication proteins [BR:
cjf03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
131875722
DNA repair and recombination proteins [BR:
cjf03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
131875722
MMR (mismatch excision repair)
131875722
DSBR (double strand breaks repair)
HR (homologous recombination)
131875722
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep-A_N
REPA_OB_2
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
131875722
NCBI-ProteinID:
XP_059076336
LinkDB
All DBs
Position
5:complement(83820582..83821698)
Genome browser
AA seq
333 aa
AA seq
DB search
MAILTTDAIKLIVEGAIDLSPCIQVFFISTFGSNPEQTTRFRLDIFDGTDKRKATLPKKY
NDYIIFEEIKIGSIIKLSEYSYPKSSKTWWIMIIRLEIVSTIHEMIGEPVSLDVDQYCQM
DQATQLTPNFDIGVENLQNSGTLSQTKVLFGVKRPQSSSGVLSIITPIKNLNPFQTRWTI
KVRVTIKKEIHQYNKQTRNGRVFSFDIIDREGTLTRVSGFNNMADTNYGNIDIGAMYKIS
GGVVKIANKIYNKLNSGIEITLVPESIVTPCEDDPSIPKNYFSFMPINEITEKSNNSIID
VIGVVICVEPSSTIRRRDGIEVIRRTIKLLDMS
NT seq
1002 nt
NT seq
+upstream
nt +downstream
nt
atggctatattaactacagatgcaatcaagcttatagtggaaggagctatagacttatcc
ccatgcatccaagtattctttatatcaacatttgggagcaaccctgaacaaactacacga
tttcgattagatatttttgatggtacagacaagcgcaaagcaacgttgcccaagaagtat
aatgattacataatctttgaagagattaagattggatccataataaagttatcagagtac
agctatcccaaatcgagtaagacatggtggattatgattatacgtttggagatcgtatct
acgatacatgaaatgattggggaaccagtctcccttgatgtagaccagtactgccagatg
gatcaagcgacacaactcacccctaattttgatattggagtagaaaacctccaaaattca
gggacactctctcagacaaaagtactatttggagtaaagcgaccccaaagttcaagtggg
gtattgagcataattacacctataaagaacttgaatccattccaaacaaggtggactatc
aaagttcgtgtgactataaagaaagaaattcatcaatacaataagcaaacaagaaatggt
cgagtgtttagcttcgacatcatagatagggaagggacattgacacgtgtatcgggtttt
aacaatatggcagacacaaattatggtaatatagacattggagctatgtataagatttca
ggtggggttgtgaaaattgctaataaaatttataacaaacttaacagtgggatagaaata
actcttgtccctgaatcaatagtaaccccctgtgaagatgacccttccattccaaaaaac
tatttctcattcatgcctattaatgaaataactgagaaaagtaataattcaatcatcgat
gttattggtgttgttatttgtgtagaaccaagctctacaatcagaagaagagatggaata
gaggttataaggcgtaccataaagctactggatatgtcttga
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