Cryptomeria japonica (Japanese cedar): 6166557
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Entry
6166557 CDS
T10556
Symbol
rpoA, CrjaCp011
Name
(RefSeq) RNA polymerase alpha subunit
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
cjf Cryptomeria japonica (Japanese cedar)
Pathway
cjf03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
cjf00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
6166557 (rpoA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjf03021
]
6166557 (rpoA)
03400 DNA repair and recombination proteins [BR:
cjf03400
]
6166557 (rpoA)
Enzymes [BR:
cjf01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
6166557 (rpoA)
Transcription machinery [BR:
cjf03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
6166557 (rpoA)
DNA repair and recombination proteins [BR:
cjf03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
6166557 (rpoA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_CTD
RNA_pol_A_bac
RNA_pol_L
HHH_5
RAD51D_N
SAM_EPH
HHH_2
HHH_3
Motif
Other DBs
NCBI-GeneID:
6166557
NCBI-ProteinID:
YP_001806640
UniProt:
B1VKC7
LinkDB
All DBs
Position
Pltd:complement(9357..10385)
Genome browser
AA seq
342 aa
AA seq
DB search
MNQNEIAVSMKIPELKCVESRTENKRFHYSRFTLSPLRKGQANTIGSAIRRVLLGEVEGT
CITRAKFHNISNEYSVIIGIEESIHEILMNLKEIVLRSDAYGIREGSIHVVGPKKVTAQD
IMLPPSVRIIDTTQHIANINKSITLDISLQIEKGRGYIIQNPNNYNPKDEIFAIDAAFVF
PIDAAFAPVQNVNYSIHSYWSENETQEILFLEIWTNGGLAPKEALYEASRNLIDFFLPFL
NAKEENSDGTNSLSDDITPSLPILHISTDTKRIAFDQMYIDQLNFSTRVYNCLKKANINT
VSDLLNYSREDLMKIKHLGEQSVKEILEFIRNIQIDSPGNPV
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atgaatcagaatgaaatagcagtctcaatgaagataccagaattgaagtgcgttgaatcc
agaacagagaataagcgttttcattatagtcgtttcactctatctccgcttcgcaaaggt
caagctaatacaataggcagcgcaataagaagagttttacttggagaagtagaaggaaca
tgtatcacacgtgctaaatttcacaatatatcaaacgaatattccgtaataataggtatt
gaagaatcaatacatgaaattttgatgaatctgaaagaaattgtacttcgaagtgatgcg
tacggaattcgagaaggatctatccatgttgtcggaccaaaaaaagtaaccgctcaagat
atcatgttgccaccttctgtgagaataatcgatactacacaacatatagctaacataaac
aaatcaattaccttagatatatcattacaaattgaaaaaggtcgcggatatattattcaa
aatccaaataattacaatcctaaggatgaaatttttgctatagatgctgcctttgtcttt
cctatagatgctgcctttgcccctgttcaaaatgtaaattacagtattcactcctattgg
agcgaaaatgagacacaagaaattctatttcttgaaatatggacgaatggaggattagct
cctaaagaagcactttacgaagcttctcggaatttgattgactttttccttccctttcta
aatgcaaaggaagagaacagcgatggaacaaacagtctaagcgacgatattactccttcc
ttacctattttgcatatatcgactgatacgaagagaatagcttttgatcaaatgtatatt
gaccaattaaacttctctactagggtatataattgcctcaaaaaggcaaatataaataca
gtatcggaccttttgaattacagtcgagaagatttaatgaaaataaaacatcttggggaa
caatctgtcaaagaaatcttggaatttatacgaaatattcaaattgattcaccggggaat
ccggtttag
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