Kaistella jeonii: NCTC13459_01871
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Entry
NCTC13459_01871 CDS
T06863
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
cjg
Kaistella jeonii
Pathway
cjg03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
cjg00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NCTC13459_01871 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
cjg03021
]
NCTC13459_01871 (rho)
03019 Messenger RNA biogenesis [BR:
cjg03019
]
NCTC13459_01871 (rho)
Transcription machinery [BR:
cjg03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
NCTC13459_01871 (rho)
Messenger RNA biogenesis [BR:
cjg03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
NCTC13459_01871 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
NACHT
AAA_25
S1CSD-TOTE-2
AAA_22
AAA
Motif
Other DBs
NCBI-ProteinID:
VEI96241
LinkDB
All DBs
Position
1:complement(1980768..1982708)
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AA seq
646 aa
AA seq
DB search
MFNIETLKSKSDTDLAKITQDLGVKVAKNSTENDKVFAILDFQASNSKVAKDYYNATQTP
MITEENSTPAPKKPVAKKPAPKKKVEKPAEVVAVADEITENAVAMVEESNSEDLKKENVQ
PTTEEPKKQNSEQKKKRQRTPQAQEQMSADNSVDEVVTEKESEVKQLKAKNPNQNPNQNQ
NPNQNKNPNPNQNPNQEQNGNGNVNQSGNGNQNGSGNVNQNGNGNQNPNPNQNPNQNKPH
HPNQNRNPNQNKNPNQNKNQQNADSHEEPAKKEFNFDGLVTIEGVLEILPDNYGFLRSSD
FSYISSPDDVYVSTNQIRNYALKTGDTVKGIVRLPKEGEKYFSLLKPTEVNGRDMEFIKD
RVSFEFLTPLFPEEKFNLTGKNSTLSTRIVDLFTPIGKGQRAMIVAQPKTGKTMLLKDIA
NSISANHPEAYMMILLIDERPEEVTDMERSVNAEVIASTFDEPADKHVKVANLVLSKAQR
MVECGHDVVILLDSITRLARAYNTVTPASGKILSGGVDANALHKPKRFFGAARNIEGGGS
LTIIATALIDTGSKMDEVIFEEFKGTGNMELQLDRKIANKRTYPAIDLVSSSTRRDDLLM
DETTQQRMWILRKYLADMNPVEAMEFVNKSMKNTLNNEEFLMSMNR
NT seq
1941 nt
NT seq
+upstream
nt +downstream
nt
atgttcaatatcgaaacgttaaagtcgaaatccgatacggatttggctaaaatcacccaa
gatttaggcgttaaagttgctaaaaatagcacagaaaatgataaagtttttgcaatcctg
gattttcaggcttcgaactcgaaagttgcaaaagattattataacgccactcaaactcct
atgattacagaagaaaattcaactcctgcgccaaaaaaaccggttgcaaaaaaaccagca
cctaaaaagaaagtcgagaaaccggctgaagttgttgctgttgcagacgagattacagaa
aatgcggttgcaatggttgaggaatctaattctgaggatttaaagaaggaaaatgttcaa
cctacaacggaagaaccgaaaaaacaaaattctgaacagaagaaaaaaagacagcgaacg
ccacaagcacaggagcaaatgtctgctgataattccgtagatgaggttgtgacagagaag
gaatctgaggtaaaacagctgaaggcgaaaaacccaaatcagaatcctaatcagaaccaa
aacccgaatcagaataaaaacccgaatccgaatcaaaatcccaatcaggaacagaacgga
aacggtaatgtaaatcaaagcggaaacggtaatcagaacggaagtggtaatgtaaatcaa
aatggaaacgggaatcaaaaccccaatcctaatcagaatcccaatcagaataaaccgcat
catcctaatcaaaacaggaatccgaaccaaaataaaaaccctaaccaaaacaaaaatcag
caaaacgcagattctcacgaggagccggcgaaaaaagaatttaatttcgatggtttagta
acgattgaaggtgttttggaaatccttccagacaactacggtttcttacgttcttcagat
ttctcttacatttcttctcccgacgatgtttacgtttctacgaatcagattcgtaattat
gctttgaaaacgggagatactgtaaaaggaatcgtgcgtttaccaaaagaaggcgagaaa
tatttctctttattaaagcctacagaagtgaatggtcgcgatatggaattcattaaagac
cgagtttcttttgaattcttaacgccattatttccggaagagaaatttaatttaactgga
aaaaattcaacgctttctacaagaattgttgatctgtttacgccaataggaaaaggacaa
agagcaatgattgtggcgcaaccgaaaaccggtaaaaccatgttgttgaaggatattgcg
aattcaatttctgccaatcatccagaagcttatatgatgatcttactcattgatgaaaga
ccagaagaggtaaccgatatggaaagaagcgtaaatgcagaagtaattgcttctacattt
gatgaacctgcagacaaacacgtaaaagtggcaaatctggttctgtcgaaagcacaaaga
atggtagaatgtggtcatgatgttgtgatcttattagattcaataacgcgtttggcaaga
gcttataacaccgtaactccggcttcaggaaaaattctttccggtggtgttgatgcaaat
gcattgcacaaaccaaaacgttttttcggagcggcaagaaatattgaaggcggtggttca
ttgactattattgcaacagcattgatcgatacaggttcgaaaatggatgaagtgattttc
gaggaatttaaaggaaccggaaatatggaacttcagttagaccgaaaaatcgcgaataaa
agaacgtatcctgcgatcgacctggtttcttcgagtacaagaagagatgatcttttgatg
gatgaaacaacgcagcagagaatgtggatcctaagaaaatatttagcagatatgaatcca
gtcgaagcaatggaatttgtaaacaaaagcatgaaaaatactttgaacaacgaagagttt
ttgatgtcgatgaatcgataa
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